Bioinformatics & Gene Regulation

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TOOLS
  Single motif
  Composite motif
  Promoter fetcher
  Compo
  genePI
  PriorsEditor

Last Update:
September 27, 2017


Tools	Description	Downloads

Online benchmarks
Composite motif discovery benchmark	Web service for assessing composite motif discovery tools. The benchmark can be used with user-specified methods for composite motif discovery. Reference: (2008)"Assessment of composite motif discovery methods" Klepper, K; Sandve, GK; Abul, O; Johansen, J; Drablos,F BMC Bioinformatics 9():123 view article	benchmark TRANSCompel data sets benchmark Liver data set benchmark Muscle data set

Motif discovery benchmark	Web service for assessing single motif discovery tools. Reference: (2007) "Improved benchmarks for computational motif discovery" Sandve, G.K.; Abul, O.; Walseng, V.; Drablos, F. BMC bioinformatics 8():193 view article	benchmark data sets answer files source code predictions for testing benchmark

Online tools
Genomic region fetcher	This tool fetches genomic sequences for a user specified list of start and stop positions together with chromosome.

MicroRNA gene Prediction
MicroRNA target Prediction

Other tools
Compo	Composite motif discovery using discrete models	Compo source code(zip) Predictions made by Compo on the benchmark data sets presented in the article

genePI	Gene promoter identification system	genePI source code(tar.gz)

Human TFs	Human Transcription factors

Bioinformatics & Gene Regulation
Department of Cancer Research and Molecular Medicine
Norwegian University of Science and Technology
Trondheim, Norway