Bioinformatics & Gene Regulation

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TOOLS
  Single motif
  Composite motif
  Promoter fetcher
  Compo
  genePI
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Last Update:
September 27, 2017

Genomic region fetching

This tool fetches genomic sequences for a user specified list start and stop positions with chromosome.

!! Input format has to have the following composition:

name	version	chrom	start		end		sequence(optional)		(optional)

example:
R08505	hg18	chr1	227636710		227636735		ccctcctgacccgacccagttgccc	0.99

Example file with one feature:  input_file_example.txt 

There must be a tab between the values.
A tab instead of a value is permitted.

Search
Fetch:	Genomic sequence Genes in region
	Predicted regulatory regions Low Complexity

Left flank
Right flank
Upload file

Export
File Export format	Full (tab separated format) ID/sequence (small FASTA format)

Bioinformatics & Gene Regulation
Department of Cancer Research and Molecular Medicine
Norwegian University of Science and Technology
Trondheim, Norway