Bioinformatics & Gene Regulation

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Last Update:
September 27, 2017

DATASETS

This page contains links to useful datasets collected by our own research group as well as other groups from around the world.
See "Details" on each set for credits and literature references.

ChIP-seq transcription factor binding site benchmark

	Benchmark peak regions
	http://www.bigr.medisin.ntnu.no/data/tfbs-chip-seq-benchmark/Dataset_S2_site.txt.zip http://www.bigr.medisin.ntnu.no/data/tfbs-chip-seq-benchmark/Dataset_S3_promoter.txt.zip http://www.bigr.medisin.ntnu.no/data/tfbs-chip-seq-benchmark/macssissr.zip

DNase hypersensitive sites

	DNaseHS sites - ENCODE (2006)
	http://research.nhgri.nih.gov/DNaseHS/chip_2006/
	DNase HS sites - Genome-wide (2005)
	http://research.nhgri.nih.gov/DNaseHS/May2005/
	DNase HS sites - Pilot study (2004)
	http://research.nhgri.nih.gov/DNaseHS/Jan2004/

Histone modifications

	Histone methylations and acetylations
	http://dir.nhlbi.nih.gov/papers/lmi/epigenomes/hgtcell.html http://dir.nhlbi.nih.gov/papers/lmi/epigenomes/hgtcellacetylation.html

Bioinformatics & Gene Regulation
Department of Cancer Research and Molecular Medicine
Norwegian University of Science and Technology
Trondheim, Norway