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Last Update:
September 27, 2017
Single motif benchmark
Step 1: Register as a user and login.
Step 2: Download datasets. File contains 3 datasets: algorithm_markov, algorithm_real and model_real.datasets.tar.gz
Step 3: Run your method on the downloaded dataset. Prediction filenames must consist of the name of the sequence ending with _pred.txt.
Example: algorithm_markov/M00966_pred.txt
Step 4: Parse your results to our predefined result format.
Example: M00441_pred.txt
Step 5: Put your results from each run in predefined directories equal to datasets, i.e. algorithm_markov/sequencename_pred.txt
Step 6: Upload predictions. File should be a tar.gz,tar or zip-file with the dataset directories as top.
Step 7: Start using benchmark
For testing, download this file to be used in benchmark: testset.tar.gz
Bioinformatics & Gene RegulationDepartment of Cancer Research and Molecular Medicine
Norwegian University of Science and Technology
Trondheim, Norway