Bioinformatics & Gene Regulation


	MAIN RESEARCH MEMBERS PUBLICATIONS SERVICES COURSES CONFERENCES EMPLOYMENT JOURNALS MEETINGS CONTACT TOOLS Single motif Composite motif Promoter fetcher Compo genePI PriorsEditor DATASETS LOGIN Last Update: September 27, 2017		Supplementary Material for Gilljam et al. (2009) Search results for the PCNA binding motifs PIP (Warbrick, 2000) and APIM (Gilljam et al., 2009) against orthologous sequences using confind (Drabløs, unpublished). The confind tool identifies pattern hits in a target organism (here human), and filters potential hits against (predicted) protein localisation and motif conservation in orthologous sequences. Supplementary Methods Details for each run can be found in output. confind_APIM_out.html confind_PIP_out.html Supplementary Material for Olaisen et al. (Submitted) Search results for the PCNA binding motifs PIP (Warbrick, 2000) and APIM (Gilljam et al, 2009) against orthologous sequences using confind (Drabløs, unpublished), with human and yeast as target organisms, and without any filtering for subcellular localisation. Out of the 503 entries for APIM hits in humans, 125 entries do not have any hit in at least one of the three mammalian species used for filtering (cow, rat and mouse), leaving 378 well-conserved hits in the mammals. Details for each run can be found in the output. confind_APIM_All_Hs.html confind_PIP_All_Hs.html confind_APIM_All_Sc.html confind_PIP_All_Sc.html
			Bioinformatics & Gene Regulation Department of Cancer Research and Molecular Medicine Norwegian University of Science and Technology Trondheim, Norway