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Last Update:
September 27, 2017
DATASET
| Dataset | Benchmark peak regions |
| Organism | Homo sapiens (Genome build: hg18) |
| Coverage | genome-wide |
| Size | 11.9 MB |
| Format | zipped txt |
URL | http://www.bigr.medisin.ntnu.no/data/tfbs-chip-seq-benchmark/Dataset_S2_site.txt.zip http://www.bigr.medisin.ntnu.no/data/tfbs-chip-seq-benchmark/Dataset_S3_promoter.txt.zip http://www.bigr.medisin.ntnu.no/data/tfbs-chip-seq-benchmark/macssissr.zip |
Description | Genomic loci of the test regions and peak regions for the site benchmark dataset. Each line gives the test region (chromosome, start, stop) and the transcription factor used in the test (either cfoshela, cfos, cjun, cmychela, cmyc, e2f4hela, e2f4, gata1, maxhela, max, nfkb, or nrsf; the ``hela'' suffix indicates peaks in HeLa-S3), followed by any peak regions therein (if applicable) separated by semi-colons. |
References | (2011) Håndstad T, Rye MB, Drabløs F, Sætrom P "A ChIP-Seq benchmark shows that sequence conservation mainly improves detection of strong transcription factor binding sites" PLoS One 6(4):e18430 |
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Bioinformatics & Gene Regulation Department of Cancer Research and Molecular Medicine Norwegian University of Science and Technology Trondheim, Norway
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