| Description | Version |
|---|
| The "default values" of the Sequence Numeric Maps produced by the statistic operation cannot be trusted.
| Version 2
( Fixed in v2.0.-1 )
( Applies not to v1 ) |
| Sometimes when executing a command which replaces an existing data object, the object in question is not properly updated.
However, if one deletes the original object first and then executes a command to create it anew it works just fine.
The behaviour is inconsistent and not reproducible between sessions, so it is difficult to pinpoint the exact cause of this problem.
.
| Version ?
|
| A serious bug was discovered pertaining to local caching of data from
region tracks. Read more.
| Before v1.08 |
| The manual "edit region" functionality in the visualization panel
(invoked by double-clicking on a region while holding down CONTROL) and "delete region"
functionality (invoked by pointing at a region and pressing DELETE) does not
work properly for module regions. This also includes UNDO/REDO of these
actions. | Version 1.x |
| Some installations of MotifLab may contain a faulty datatrack
configuration file which makes it impossible to correctly import DNA
sequence data for the hg19 genome build with the "Add Feature Data
Tracks" function. Rather than importing the proper sequence, all the bases are set to N's
(importing directly from FASTA files should work fine, however). To fix this
issue, go to the "Configure" menu and select "Configure Datatracks". Next,
press the "Configure Datatracks and Sources" button and edit the "DNA"
track. Select the line in the data sources table which reads "Human, hg19,
GET, ,tare.medisin.ntnu.no" (with a blank Format column) and press the
"Edit Source" button. Finally, select "FASTA" from the Data Format drop-down
menu. After saving the new configuration, you should probably bring up the
Options dialog (under the Configure menu) and clear the cached feature
data. A short video describing this procedure can be found here | |
| Deleting temporary files (of which there sometimes can be quite many)
after MotifLab exits can take a long time
and hog a lot of CPU resources, especially on computers running Windows. | Version 1.x
(not yet fixed in v2.0) |
| For most motif discovery tools that have the option to search either
both strands or a single strand (such as ChIPMunk), the single strand option
will only search the direct strand of the sequence when its orientation is
known. Future releases of MotifLab will probably search the relative strand instead
(i.e. the DNA sequence from the strand that the sequence is assigned to). | Version 1.x
(not yet fixed in v2.0) |
|
When creating output of Region datasets in EvidenceGFF format, region
properties will not be properly output if the property name contains uppercase letters.
| Version 1.x
|