| Date | Version | Description | |
|---|
| 2011-05-30 | 1.0.11 |
Fixed multiple bugs (including a serious bug affecting sequence masking
with higher order background models) and also improved the speed of output
to text files (this improvement is substantial for large datasets).
|
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| 2010-12-20 | 1.0.10* |
- Printing: It has come to our attention that the print-functionality (which was
based on standard Java APIs) did not work well for text-documents. Therefore,
in version 1.0.10 the printing of text-documents is done through external programs.
- Fixed serious bugs:
Corrected type assignments for increase/decrease/weight/divide operations in protocol
Corrected wrongful deletion of singular regions in the
merge-operation
Corrected non-functional import of MotifCollections
from file
Corrected (or rather improved) precision problems when copy/pasting integer values into tables
Fixed bug which could cause deadlock when aborting external programs and made stop-button more responsive
- Fixed minor bugs:
Corrected 1-pixel offset bug for draw tool and
improved functionality somewhat
Corrected a few spelling mistakes
Proper initialization of dialog for statistic-operation
Fixed bug in suggested default names for target data
in dialog for execute-operation
Selection should now work all the way to the end of
the sequence window on all scales
Fixed protocol bug for selection windows
Fixed NullPointerException in Add External Program from Repository Dialog
|
Web
Start
Download |
| 2010-08-19 | 1.0.9 |
- Fixed a few serious bugs
(Bugs in increase/decrease/weight/divide operations with respect to Numeric Variables)
- Added citation information
| Web Start
Download |
| 2010-08-16 | 1.0.8* |
- Fixed a few (somewhat serious) bugs
(Setting proper visualization settings for new motif tracks, proper update of track visualization after conversion and restrictions on data type conversions)
| |
| 2010-08-12 | 1.0.7 |
- Updated Jaspar and Transfac motif files
- Various minor bugfixes
| Web Start
Download |
| 2010-08-05 | 1.0.6 |
- Added functionality to search for repeated patterns (direct or inverted) in DNA sequences
- Various updates and minor bugfixes
| |
| 2010-07-07 | 1.0.5 | - Minor updates and bugfixes
| |
| 2010-07-02 | 1.0.4 |
- Added "external programs repository" to External Programs Dialog.
Download XML-configuration files and install external programs without leaving PriorsEditor
- Added support for multiple output data objects from External Programs
- Show/hide individual sequences (and collections) in the Visualization panel
- Added BED-format support
- Added support for BioProspector motif discovery program
- "PWM match" filter in Motif Browser. Search for motifs whose PWMs match a given DNA string
- Added possibility to assign colors to motifs in the Motif Browser
- Added more example sequences in Sequence Dialog
(press the Example button several times to cycle through different gene sets)
- Fixed various minor bugs
| |
| 2010-06-11 | 1.0.3 | - Fixed bug in 'convert' operation
| |
| 2010-06-08 | 1.0.2 | - Fixed a few minor bugs and annoyances
| |
| 2010-05-28 | 1.0.1 |
- New tools: Motif browser and Motif Score Filter
- "Condensed mode" for visualization
- Conversion to motif track
- Improved the XML-configuration-file format for external programs
- Added support for Weeder and MDscan motif discovery programs
- Creation of PWM from short aligned sequence segments in the Motif dialog
- Mismatch search
- Added HTML-based output-format for motifs
- Improved protocol keyword coloring
- Fixed various minor bugs
| |
| 2010-03-23 | 1.0.0 | First release of PriorsEditor | |