Benchmark evaluation: IRF-NFkappaB
| Track | Sn | Sp | PPV | PC | ASP | F | Acc | CC | sSn | sSn | sPPV | sPC | sASP | sF |
| Baseline | 0.967 | 0.994 | 0.891 | 0.864 | 0.929 | 0.927 | 0.993 | 0.924 | 1 | 1 | 1 | 1 | 1 | 1 |
| Conserved0 | 0.963 | 0.991 | 0.847 | 0.82 | 0.905 | 0.9 | 0.989 | 0.897 | 1 | 1 | 1 | 1 | 1 | 1 |
| Conserved10 | 0 | 0.866 | 0 | 0 | 0 | 0 | 0.824 | -0.086 | 0 | 0 | 0 | 0 | 0 | 0 |
| Conserved30 | 0.262 | 0.913 | 0.132 | 0.097 | 0.197 | 0.176 | 0.881 | 0.127 | 0.3 | 0.3 | 0.3 | 0.178 | 0.3 | 0.3 |
| Conserved60 | 0.383 | 0.955 | 0.303 | 0.203 | 0.343 | 0.338 | 0.928 | 0.303 | 0.467 | 0.467 | 0.56 | 0.344 | 0.513 | 0.509 |
| Interacting10 | 0.965 | 0.994 | 0.899 | 0.871 | 0.932 | 0.931 | 0.993 | 0.928 | 1 | 1 | 1 | 1 | 1 | 1 |
| Interacting20 | 0.967 | 0.995 | 0.91 | 0.882 | 0.938 | 0.937 | 0.994 | 0.935 | 1 | 1 | 1 | 1 | 1 | 1 |
| C10_I10 | 0.178 | 0.904 | 0.086 | 0.062 | 0.132 | 0.116 | 0.869 | 0.058 | 0.333 | 0.333 | 0.333 | 0.202 | 0.333 | 0.333 |
| C30_I10 | 0.039 | 0.904 | 0.02 | 0.013 | 0.029 | 0.026 | 0.862 | -0.042 | 0 | 0 | 0 | 0 | 0 | 0 |
| C60_I10 | 0.384 | 0.955 | 0.303 | 0.204 | 0.343 | 0.338 | 0.928 | 0.303 | 0.5 | 0.5 | 0.6 | 0.375 | 0.55 | 0.545 |
| C10_I20 | 0.202 | 0.902 | 0.095 | 0.069 | 0.148 | 0.129 | 0.868 | 0.073 | 0.333 | 0.333 | 0.333 | 0.2 | 0.333 | 0.333 |
| C30_I20 | 0.229 | 0.896 | 0.102 | 0.076 | 0.166 | 0.141 | 0.864 | 0.087 | 0.167 | 0.167 | 0.167 | 0.091 | 0.167 | 0.167 |
| C60_I20 | 0.384 | 0.955 | 0.303 | 0.204 | 0.343 | 0.338 | 0.928 | 0.303 | 0.5 | 0.5 | 0.6 | 0.375 | 0.55 | 0.545 |