Benchmark evaluation: CEBP-NFkappaB
| Track | Sn | Sp | PPV | PC | ASP | F | Acc | CC | sSn | sSn | sPPV | sPC | sASP | sF |
| Baseline | 0.763 | 0.947 | 0.597 | 0.561 | 0.68 | 0.669 | 0.93 | 0.637 | 0.762 | 0.762 | 0.762 | 0.684 | 0.762 | 0.762 |
| Conserved0 | 0.584 | 0.943 | 0.502 | 0.39 | 0.543 | 0.54 | 0.91 | 0.492 | 0.55 | 0.55 | 0.629 | 0.432 | 0.589 | 0.587 |
| Conserved10 | 0.144 | 0.905 | 0.145 | 0.079 | 0.145 | 0.143 | 0.836 | 0.053 | 0.238 | 0.238 | 0.279 | 0.152 | 0.258 | 0.256 |
| Conserved30 | 0.279 | 0.953 | 0.371 | 0.19 | 0.325 | 0.318 | 0.891 | 0.264 | 0.488 | 0.488 | 0.65 | 0.39 | 0.569 | 0.557 |
| Conserved60 | 0.211 | 0.907 | 0.196 | 0.113 | 0.204 | 0.202 | 0.844 | 0.116 | 0.4 | 0.4 | 0.533 | 0.298 | 0.467 | 0.457 |
| Interacting10 | 0.974 | 0.973 | 0.785 | 0.777 | 0.88 | 0.869 | 0.973 | 0.861 | 0.962 | 0.962 | 0.962 | 0.945 | 0.962 | 0.962 |
| Interacting20 | 0.911 | 0.964 | 0.729 | 0.713 | 0.82 | 0.81 | 0.959 | 0.793 | 0.9 | 0.9 | 0.9 | 0.869 | 0.9 | 0.9 |
| C10_I10 | 0.103 | 0.911 | 0.103 | 0.055 | 0.103 | 0.103 | 0.837 | 0.013 | 0.15 | 0.15 | 0.171 | 0.089 | 0.161 | 0.16 |
| C30_I10 | 0.31 | 0.93 | 0.317 | 0.185 | 0.313 | 0.311 | 0.873 | 0.242 | 0.375 | 0.375 | 0.5 | 0.273 | 0.438 | 0.429 |
| C60_I10 | 0.259 | 0.953 | 0.357 | 0.177 | 0.308 | 0.3 | 0.89 | 0.246 | 0.5 | 0.5 | 0.667 | 0.4 | 0.583 | 0.571 |
| C10_I20 | 0.169 | 0.915 | 0.162 | 0.094 | 0.166 | 0.165 | 0.847 | 0.081 | 0.225 | 0.225 | 0.257 | 0.143 | 0.241 | 0.24 |
| C30_I20 | 0.31 | 0.93 | 0.317 | 0.185 | 0.313 | 0.311 | 0.873 | 0.242 | 0.375 | 0.375 | 0.5 | 0.273 | 0.438 | 0.429 |
| C60_I20 | 0.252 | 0.948 | 0.328 | 0.166 | 0.29 | 0.285 | 0.885 | 0.226 | 0.388 | 0.388 | 0.517 | 0.285 | 0.452 | 0.443 |