Benchmark evaluation: AP1-NFkappaB
| Track | Sn | Sp | PPV | PC | ASP | F | Acc | CC | sSn | sSn | sPPV | sPC | sASP | sF |
| Baseline | 0.524 | 0.921 | 0.304 | 0.24 | 0.414 | 0.384 | 0.897 | 0.348 | 0.595 | 0.595 | 0.671 | 0.465 | 0.633 | 0.63 |
| Conserved0 | 0.532 | 0.91 | 0.284 | 0.227 | 0.408 | 0.367 | 0.888 | 0.333 | 0.593 | 0.593 | 0.657 | 0.461 | 0.625 | 0.623 |
| Conserved10 | 0.584 | 0.938 | 0.371 | 0.294 | 0.478 | 0.454 | 0.917 | 0.424 | 0.743 | 0.743 | 0.743 | 0.594 | 0.743 | 0.743 |
| Conserved30 | 0.177 | 0.917 | 0.117 | 0.076 | 0.147 | 0.141 | 0.873 | 0.077 | 0.15 | 0.15 | 0.171 | 0.089 | 0.161 | 0.16 |
| Conserved60 | 0.279 | 0.936 | 0.215 | 0.138 | 0.247 | 0.243 | 0.897 | 0.191 | 0.5 | 0.5 | 0.571 | 0.364 | 0.536 | 0.533 |
| Interacting10 | 0.628 | 0.941 | 0.413 | 0.331 | 0.521 | 0.496 | 0.922 | 0.469 | 0.634 | 0.634 | 0.714 | 0.506 | 0.674 | 0.671 |
| Interacting20 | 0.556 | 0.926 | 0.326 | 0.258 | 0.441 | 0.409 | 0.904 | 0.377 | 0.634 | 0.634 | 0.714 | 0.506 | 0.674 | 0.671 |
| C10_I10 | 0.624 | 0.933 | 0.378 | 0.313 | 0.501 | 0.47 | 0.914 | 0.443 | 0.809 | 0.809 | 0.814 | 0.7 | 0.812 | 0.811 |
| C30_I10 | 0.356 | 0.916 | 0.211 | 0.152 | 0.283 | 0.265 | 0.883 | 0.214 | 0.375 | 0.375 | 0.429 | 0.25 | 0.402 | 0.4 |
| C60_I10 | 0.279 | 0.936 | 0.215 | 0.138 | 0.247 | 0.243 | 0.897 | 0.191 | 0.5 | 0.5 | 0.571 | 0.364 | 0.536 | 0.533 |
| C10_I20 | 0.665 | 0.939 | 0.407 | 0.338 | 0.536 | 0.505 | 0.923 | 0.482 | 0.857 | 0.857 | 0.857 | 0.75 | 0.857 | 0.857 |
| C30_I20 | 0.352 | 0.916 | 0.209 | 0.151 | 0.28 | 0.262 | 0.882 | 0.211 | 0.375 | 0.375 | 0.429 | 0.25 | 0.402 | 0.4 |
| C60_I20 | 0.276 | 0.936 | 0.214 | 0.137 | 0.245 | 0.241 | 0.897 | 0.189 | 0.5 | 0.5 | 0.571 | 0.364 | 0.536 | 0.533 |