Benchmark evaluation: AP1-NFAT
| Track | Sn | Sp | PPV | PC | ASP | F | Acc | CC | sSn | sSn | sPPV | sPC | sASP | sF |
| Baseline | 0.369 | 0.876 | 0.074 | 0.066 | 0.222 | 0.124 | 0.863 | 0.117 | 0.427 | 0.427 | 0.588 | 0.33 | 0.507 | 0.495 |
| Conserved0 | 0.359 | 0.875 | 0.072 | 0.064 | 0.216 | 0.12 | 0.861 | 0.111 | 0.418 | 0.418 | 0.575 | 0.321 | 0.497 | 0.484 |
| Conserved10 | 0.421 | 0.897 | 0.098 | 0.086 | 0.26 | 0.159 | 0.885 | 0.161 | 0.459 | 0.459 | 0.588 | 0.349 | 0.523 | 0.515 |
| Conserved30 | 0.382 | 0.89 | 0.085 | 0.075 | 0.233 | 0.139 | 0.877 | 0.135 | 0.436 | 0.436 | 0.6 | 0.339 | 0.518 | 0.505 |
| Conserved60 | 0.488 | 0.91 | 0.129 | 0.114 | 0.309 | 0.204 | 0.899 | 0.213 | 0.565 | 0.565 | 0.8 | 0.499 | 0.683 | 0.663 |
| Interacting10 | 0.417 | 0.88 | 0.085 | 0.076 | 0.251 | 0.141 | 0.868 | 0.141 | 0.455 | 0.455 | 0.625 | 0.357 | 0.54 | 0.526 |
| Interacting20 | 0.417 | 0.88 | 0.085 | 0.076 | 0.251 | 0.141 | 0.868 | 0.141 | 0.455 | 0.455 | 0.625 | 0.357 | 0.54 | 0.526 |
| C10_I10 | 0.289 | 0.925 | 0.093 | 0.076 | 0.191 | 0.141 | 0.908 | 0.125 | 0.364 | 0.364 | 0.5 | 0.267 | 0.432 | 0.421 |
| C30_I10 | 0.424 | 0.887 | 0.091 | 0.081 | 0.258 | 0.149 | 0.875 | 0.151 | 0.479 | 0.479 | 0.65 | 0.385 | 0.565 | 0.551 |
| C60_I10 | 0.544 | 0.916 | 0.148 | 0.132 | 0.346 | 0.233 | 0.906 | 0.249 | 0.6 | 0.6 | 0.857 | 0.545 | 0.729 | 0.706 |
| C10_I20 | 0.364 | 0.886 | 0.079 | 0.07 | 0.222 | 0.13 | 0.873 | 0.123 | 0.396 | 0.396 | 0.5 | 0.284 | 0.448 | 0.442 |
| C30_I20 | 0.406 | 0.888 | 0.089 | 0.078 | 0.247 | 0.145 | 0.876 | 0.144 | 0.455 | 0.455 | 0.625 | 0.357 | 0.54 | 0.526 |
| C60_I20 | 0.529 | 0.916 | 0.144 | 0.128 | 0.336 | 0.226 | 0.906 | 0.241 | 0.595 | 0.595 | 0.846 | 0.537 | 0.72 | 0.698 |