#recreate
#id||parent_id||name||URI
0||0||Software_Ontology||NA
1||61||pure rna||http://edamontology.org/format_1217
2||36||unambiguous pure protein||http://edamontology.org/format_1218
3||61||pure dna||http://edamontology.org/format_1215
4||36||unambiguous pure rna sequence||http://edamontology.org/format_1216
5||1605||Gene expression report ID||http://edamontology.org/data_1080
6||38||pure protein||http://edamontology.org/format_1219
7||1605||Organism identifier||http://edamontology.org/data_1869
8||3581||PCR primer design (for gene transcription profiling)||http://edamontology.org/operation_0519
10||3581||PCR primer design (for genotyping polymorphisms)||http://edamontology.org/operation_0518
9||3745||Protein fold name||http://edamontology.org/data_1867
12||2057||Taxon||http://edamontology.org/data_1868
11||3581||PCR primer design (for large scale sequencing)||http://edamontology.org/operation_0517
13||2936||Profile-to-profile alignment (pairwise)||http://edamontology.org/operation_0511
14||3942||Sequence alignment generation (multiple profile)||http://edamontology.org/operation_0512
15||1082||QTL map||http://edamontology.org/data_1860
16||1605||Electron microscopy model ID||http://edamontology.org/data_1079
18||1605||Microarray experiment annotation ID||http://edamontology.org/data_1078
17||2948||Global structure alignment||http://edamontology.org/operation_0510
19||3942||Data retrieval (tool metadata)||http://edamontology.org/operation_0515
20||3942||Map type||http://edamontology.org/data_1866
21||3942||Data retrieval (database metadata)||http://edamontology.org/operation_0516
22||3942||Map feature||http://edamontology.org/data_1865
23||2940||3D profile-to-3D profile alignment (pairwise)||http://edamontology.org/operation_0513
24||3881||Map set data||http://edamontology.org/data_1864
26||3942||Structural profile alignment generation (multiple)||http://edamontology.org/operation_0514
25||1082||Haplotype map||http://edamontology.org/data_1863
27||946||Amino acid index ID||http://edamontology.org/data_1073
28||1605||Structure alignment ID||http://edamontology.org/data_1072
30||3942||Nucleic acid design||http://edamontology.org/topic_2953
29||1605||Structural (3D) profile ID||http://edamontology.org/data_1071
31||949||Structure ID||http://edamontology.org/data_1070
32||1514||Transcription factor identifier||http://edamontology.org/data_1077
33||2119||Codon usage table name||http://edamontology.org/data_1076
34||1605||Protein family identifier||http://edamontology.org/data_1075
35||1605||Protein interaction ID||http://edamontology.org/data_1074
36||2834||unambiguous pure||http://edamontology.org/format_1206
37||177||nucleotide||http://edamontology.org/format_1207
38||177||protein||http://edamontology.org/format_1208
39||2830||consensus||http://edamontology.org/format_1209
40||2117||WormBase name||http://edamontology.org/data_1091
42||3942||MPSS data processing||http://edamontology.org/operation_0529
41||298||PDB insertion code||http://edamontology.org/data_1856
44||3942||SAGE data processing||http://edamontology.org/operation_0528
43||626||Atomic occupancy||http://edamontology.org/data_1857
45||626||Isotropic B factor||http://edamontology.org/data_1858
46||1098||Deletion map||http://edamontology.org/data_1859
47||3581||PCR primer design (for conserved primers)||http://edamontology.org/operation_0520
49||2122||FlyBase ID||http://edamontology.org/data_1089
48||3581||PCR primer design (based on gene structure)||http://edamontology.org/operation_0521
50||3581||PCR primer design (for methylation PCRs)||http://edamontology.org/operation_0522
51||3540||Sequence assembly (mapping assembly)||http://edamontology.org/operation_0523
52||3942||Chromosome annotation (aberration)||http://edamontology.org/data_1853
53||3540||Sequence assembly (de-novo assembly)||http://edamontology.org/operation_0524
54||3540||Sequence assembly (genome assembly)||http://edamontology.org/operation_0525
55||3942||Sequence assembly component||http://edamontology.org/data_1852
56||3212||Clone ID||http://edamontology.org/data_1855
57||3540||Sequence assembly (EST assembly)||http://edamontology.org/operation_0526
58||3094||Tag mapping||http://edamontology.org/operation_0527
59||1605||Pathway or network identifier||http://edamontology.org/data_1082
60||1605||Genotype and phenotype annotation ID||http://edamontology.org/data_1081
61||37||pure nucleotide||http://edamontology.org/format_1210
62||1605||Data resource definition ID||http://edamontology.org/data_1084
63||1605||Workflow ID||http://edamontology.org/data_1083
65||1521||Compound identifier||http://edamontology.org/data_1086
64||37||dna||http://edamontology.org/format_1212
67||36||unambiguous pure nucleotide||http://edamontology.org/format_1211
66||1605||Biological model ID||http://edamontology.org/data_1085
68||36||unambiguous pure dna||http://edamontology.org/format_1214
69||1605||Article ID||http://edamontology.org/data_1088
71||939||Ontology concept ID||http://edamontology.org/data_1087
72||37||rna||http://edamontology.org/format_1213
70||181||RDF format||http://edamontology.org/format_2376
73||3942||Gene name (DragonDB)||http://edamontology.org/data_1889
74||3516||Phylogenetic tree generation (method centric)||http://edamontology.org/operation_0539
77||3942||Gene ID (MIPS Medicago)||http://edamontology.org/data_1888
75||3942||Protein structure assignment (from NMR data)||http://edamontology.org/operation_0537
76||1964||Hierarchy||http://edamontology.org/data_2589
79||3942||Gene ID (MIPS Maize)||http://edamontology.org/data_1887
78||3516||Phylogenetic tree generation (data centric)||http://edamontology.org/operation_0538
81||2386||Blattner number||http://edamontology.org/data_1886
80||3554||Protein secondary structure assignment (from CD data)||http://edamontology.org/operation_0535
82||2386||Gene ID (GeneFarm)||http://edamontology.org/data_1885
83||3942||Protein structure assignment (from X-ray crystallographic data)||http://edamontology.org/operation_0536
84||3942||UniProt keywords||http://edamontology.org/data_1884
85||111||File name extension||http://edamontology.org/data_1059
86||2466||Gene expression profile pathway mapping||http://edamontology.org/operation_0533
89||111||Enumerated file name||http://edamontology.org/data_1058
87||1803||Northern blot image||http://edamontology.org/data_2586
88||2395||Protein secondary structure assignment (from coordinate data)||http://edamontology.org/operation_0534
90||3740||Annotated URI||http://edamontology.org/data_1883
93||3942||Sequence database name||http://edamontology.org/data_1057
94||95||DragonDB author identifier||http://edamontology.org/data_1882
91||210||Heat map generation||http://edamontology.org/operation_0531
92||1605||Blot ID||http://edamontology.org/data_2587
98||3942||Gene expression profile analysis||http://edamontology.org/operation_0532
96||92||BlotBase blot ID||http://edamontology.org/data_2588
97||290||Database name||http://edamontology.org/data_1056
95||2113||Author ID||http://edamontology.org/data_1881
99||3942||Misnomer||http://edamontology.org/data_1880
100||106||LSID||http://edamontology.org/data_1055
101||3942||COG sequence cluster format||http://edamontology.org/format_1247
102||3942||GO concept name||http://edamontology.org/data_2581
103||482||GO concept ID (biological process)||http://edamontology.org/data_2582
104||3942||SBS data processing||http://edamontology.org/operation_0530
106||289||URN||http://edamontology.org/data_1053
105||482||GO concept ID (molecular function)||http://edamontology.org/data_2583
108||3942||GO concept name (cellular component)||http://edamontology.org/data_2584
109||289||URL||http://edamontology.org/data_1052
107||3942||NCI-Nature pathway entry format||http://edamontology.org/format_2341
110||988||Ontology name||http://edamontology.org/data_1051
111||3745||File name||http://edamontology.org/data_1050
112||3942||Nucleic acid sequence composition (report)||http://edamontology.org/data_3086
114||3942||Protein sequence composition||http://edamontology.org/data_3085
113||3729||BindingDB Monomer ID||http://edamontology.org/data_2580
115||3942||UniGene entry format||http://edamontology.org/format_1228
116||3942||Misspelling||http://edamontology.org/data_1878
117||3942||Acronym||http://edamontology.org/data_1879
119||74||Phylogenetic tree generation (minimum distance methods)||http://edamontology.org/operation_0546
118||12||NCBI taxon||http://edamontology.org/data_1875
120||74||Phylogenetic tree generation (maximum likelihood and Bayesian methods)||http://edamontology.org/operation_0547
121||2057||Genbank common name||http://edamontology.org/data_1874
123||74||Phylogenetic tree generation (quartet methods)||http://edamontology.org/operation_0548
122||3942||Synonym||http://edamontology.org/data_1877
124||74||Phylogenetic tree generation (AI methods)||http://edamontology.org/operation_0549
125||3942||Secondary structure alignment metadata||http://edamontology.org/data_2598
127||78||Phylogenetic tree generation (from gene frequencies)||http://edamontology.org/operation_0542
126||1605||Phylogenetic tree ID||http://edamontology.org/data_1068
128||3942||Phylogenetic distance matrix identifier||http://edamontology.org/data_1067
131||3942||Molecule interaction report||http://edamontology.org/data_2599
130||12||Genus name||http://edamontology.org/data_1870
129||78||Phylogenetic tree construction (from polymorphism data)||http://edamontology.org/operation_0543
132||147||Phylogenetic species tree construction||http://edamontology.org/operation_0544
133||1605||Catalogue ID||http://edamontology.org/data_2596
134||2073||iHOP organism ID||http://edamontology.org/data_1873
137||4039||Format (typed)||http://edamontology.org/format_2350
138||946||Comparison matrix identifier||http://edamontology.org/data_1069
135||74||Phylogenetic tree generation (parsimony methods)||http://edamontology.org/operation_0545
136||133||CABRI catalogue name||http://edamontology.org/data_2597
139||2057||Taxonomic classification||http://edamontology.org/data_1872
141||12||UniGene taxon||http://edamontology.org/data_2594
140||1605||Sequence set ID||http://edamontology.org/data_1064
144||12||UTRdb taxon||http://edamontology.org/data_2595
143||181||BioXSD||http://edamontology.org/format_2352
142||1605||Sequence identifier||http://edamontology.org/data_1063
146||3942||Cancer type||http://edamontology.org/data_2592
147||78||Phylogenetic tree generation (from molecular sequences)||http://edamontology.org/operation_0540
145||1605||Sequence alignment ID||http://edamontology.org/data_1066
150||3942||Sequence signature identifier||http://edamontology.org/data_1065
148||78||Phylogenetic tree generation (from continuous quantitative characters)||http://edamontology.org/operation_0541
149||2073||BRENDA organism ID||http://edamontology.org/data_2593
151||3942||Hierarchy identifier||http://edamontology.org/data_2590
152||111||File base name||http://edamontology.org/data_1060
153||3723||Brite hierarchy ID||http://edamontology.org/data_2591
154||3942||Database entry identifier||http://edamontology.org/data_1062
155||2120||QSAR descriptor name||http://edamontology.org/data_1061
156||3942||ENZYME enzyme report format||http://edamontology.org/format_2323
157||3942||BioCyc enzyme report format||http://edamontology.org/format_2322
159||1145||clustering algorithm||http://www.ebi.ac.uk/swo/algorithm/OntoDM_170075
158||2461||Phylogenetic tree bootstrapping||http://edamontology.org/operation_0552
160||3512||Phylogenetic tree analysis (shape)||http://edamontology.org/operation_0551
161||2458||DNA substitution modelling||http://edamontology.org/operation_0550
163||242||Amino acid name (three letter)||http://edamontology.org/data_2564
162||3514||Phylogenetic sub/super tree detection||http://edamontology.org/operation_0556
164||242||Amino acid name (single letter)||http://edamontology.org/data_2563
165||3514||Phylogenetic tree generation (consensus)||http://edamontology.org/operation_0555
166||3512||Phylogenetic tree analysis (natural selection)||http://edamontology.org/operation_0554
167||242||Amino acid name (full name)||http://edamontology.org/data_2565
168||3512||Phylogenetic tree analysis (gene family prediction)||http://edamontology.org/operation_0553
169||2823||Immunogenicity prediction||http://edamontology.org/operation_0559
170||3094||Phylogenetic tree annotation||http://edamontology.org/operation_0558
171||3514||Phylogenetic tree distances calculation||http://edamontology.org/operation_0557
172||177||EMBL feature location||http://edamontology.org/format_1248
173||3942||PseudoCAP gene report format||http://edamontology.org/format_2328
174||3942||GeneCards gene report format||http://edamontology.org/format_2329
175||3942||URI format||http://edamontology.org/format_2334
176||4039||Binary format||http://edamontology.org/format_2333
177||4039||Textual format||http://edamontology.org/format_2330
178||3486||Sequence formatting||http://edamontology.org/operation_0561
179||1224||DNA vaccine design||http://edamontology.org/operation_0560
181||4039||XML||http://edamontology.org/format_2332
182||2468||Codon usage table formatting||http://edamontology.org/operation_0563
180||3942||Gene name (Arabidopsis)||http://edamontology.org/data_1890
183||1486||HTML||http://edamontology.org/format_2331
185||2072||iHOP symbol||http://edamontology.org/data_1891
184||3486||Sequence alignment formatting||http://edamontology.org/operation_0562
187||3942||Gene name (GeneFarm)||http://edamontology.org/data_1892
186||2397||Sequence alignment visualisation||http://edamontology.org/operation_0565
188||65||Toxin identifier||http://edamontology.org/data_2576
190||1605||Locus ID||http://edamontology.org/data_1893
189||2397||Sequence visualisation||http://edamontology.org/operation_0564
191||2500||Phylogenetic tree visualisation||http://edamontology.org/operation_0567
193||190||Locus ID (AGI)||http://edamontology.org/data_1895
192||3476||Sequence cluster visualisation||http://edamontology.org/operation_0566
195||190||Locus ID (ASPGD)||http://edamontology.org/data_1896
194||3476||Protein secondary structure visualisation||http://edamontology.org/operation_0569
196||190||Locus ID (MGG)||http://edamontology.org/data_1897
197||2479||RNA secondary structure visualisation||http://edamontology.org/operation_0568
198||190||Locus ID (CGD)||http://edamontology.org/data_1898
199||3942||Expressed gene list||http://edamontology.org/data_2579
201||190||Locus ID (CMR)||http://edamontology.org/data_1899
200||3726||ArachnoServer ID||http://edamontology.org/data_2578
203||3942||Sequence motif rendering||http://edamontology.org/operation_0574
202||1012||RefSeq accession||http://edamontology.org/data_1098
205||3942||UniProt accession (extended)||http://edamontology.org/data_1099
204||3476||Map drawing||http://edamontology.org/operation_0573
208||1281||Protein interaction network rendering||http://edamontology.org/operation_0572
206||216||Sequence accession (protein)||http://edamontology.org/data_1096
207||3942||Data index data||http://edamontology.org/data_2540
209||216||Sequence accession (nucleic acid)||http://edamontology.org/data_1097
210||2715||Microarray data rendering||http://edamontology.org/operation_0571
211||3942||Sequence type||http://edamontology.org/data_1094
212||3942||STRING entry format (HTML)||http://edamontology.org/format_2303
213||2576||Structure visualisation||http://edamontology.org/operation_0570
214||142||EMBOSS Uniform Sequence Address||http://edamontology.org/data_1095
215||2117||WormBase class||http://edamontology.org/data_1092
216||142||Sequence accession||http://edamontology.org/data_1093
217||204||Operon drawing||http://edamontology.org/operation_0579
218||204||Plasmid map drawing||http://edamontology.org/operation_0578
219||3942||DNA linear map rendering||http://edamontology.org/operation_0577
220||204||Restriction map drawing||http://edamontology.org/operation_0575
221||181||STRING entry format (XML)||http://edamontology.org/format_2304
222||177||GFF||http://edamontology.org/format_2305
223||222||GTF||http://edamontology.org/format_2306
224||183||FASTA-HTML||http://edamontology.org/format_2310
225||183||EMBL-HTML||http://edamontology.org/format_2311
226||227||background correction||http://www.ebi.ac.uk/swo/objective/SWO_7000011
227||839||correction||http://www.ebi.ac.uk/swo/objective/SWO_7000010
228||839||cross validation||http://www.ebi.ac.uk/swo/objective/SWO_7000013
229||227||error correction||http://www.ebi.ac.uk/swo/objective/SWO_7000012
230||839||data normalization||http://www.ebi.ac.uk/swo/objective/SWO_7000015
231||839||curve fitting||http://www.ebi.ac.uk/swo/objective/SWO_7000014
232||839||descriptive statistical calculation||http://www.ebi.ac.uk/swo/objective/SWO_7000017
233||839||decision tree induction||http://www.ebi.ac.uk/swo/objective/SWO_7000016
234||839||feature extraction||http://www.ebi.ac.uk/swo/objective/SWO_7000019
235||839||differential expression analysis||http://www.ebi.ac.uk/swo/objective/SWO_7000018
236||1560||Chemical registry number (Gmelin)||http://edamontology.org/data_1004
237||1560||Chemical registry number (Beilstein)||http://edamontology.org/data_1003
238||1560||Chemical registry number (CAS)||http://edamontology.org/data_1002
239||1558||Chemical name (synonymous)||http://edamontology.org/data_1001
240||1511||Polypeptide chain ID||http://edamontology.org/data_1008
241||1558||Nucleotide code||http://edamontology.org/data_1007
242||1568||Amino acid name||http://edamontology.org/data_1006
243||1558||HET group name||http://edamontology.org/data_1005
244||2459||Sequence alignment refinement||http://edamontology.org/operation_2089
245||1558||Chemical name (brand)||http://edamontology.org/data_1000
246||1514||Protein name||http://edamontology.org/data_1009
247||3942||Gene ID (GeneDB Schizosaccharomyces pombe)||http://edamontology.org/data_1800
248||2117||Gene ID (WormBase)||http://edamontology.org/data_1805
249||3942||Gene synonym||http://edamontology.org/data_1806
250||3440||ORF name||http://edamontology.org/data_1807
251||3942||Gene ID (GeneDB Trypanosoma brucei)||http://edamontology.org/data_1801
252||2386||Gene ID (Gramene)||http://edamontology.org/data_1802
253||2386||Gene ID (Virginia microbial)||http://edamontology.org/data_1803
254||2386||Gene ID (SGN)||http://edamontology.org/data_1804
255||839||center calculation||http://www.ebi.ac.uk/swo/objective/SWO_7000006
256||839||averaging||http://www.ebi.ac.uk/swo/objective/SWO_7000005
257||259||pairwise sequence alignment||http://www.ebi.ac.uk/swo/objective/SWO_7000004
258||259||multiple sequence alignment||http://www.ebi.ac.uk/swo/objective/SWO_7000003
259||2968||sequence alignment||http://www.ebi.ac.uk/swo/objective/SWO_7000002
260||839||class prediction||http://www.ebi.ac.uk/swo/objective/SWO_7000008
261||839||class discovery||http://www.ebi.ac.uk/swo/objective/SWO_7000007
262||2994||Evolutionary biology||http://edamontology.org/topic_3299
263||2994||Biotechnology||http://edamontology.org/topic_3297
264||262||Phenomics||http://edamontology.org/topic_3298
265||1784||Epigenetics||http://edamontology.org/topic_3295
266||1325||data cleaning algorithm||http://kt.ijs.si/panovp/OntoDM#OntoDM-KDD_545286
267||2323||Phylogenetics||http://edamontology.org/topic_3293
268||1779||Biochemistry||http://edamontology.org/topic_3292
269||3942||Gene identifier (Entrez)||http://edamontology.org/data_1030
270||2386||Gene ID (CGD)||http://edamontology.org/data_1031
271||2386||Gene ID (DictyBase)||http://edamontology.org/data_1032
272||958||Ensembl gene ID||http://edamontology.org/data_1033
273||864||Gene ID (SGD)||http://edamontology.org/data_1034
274||2386||Gene ID (GeneDB)||http://edamontology.org/data_1035
275||2122||TIGR identifier||http://edamontology.org/data_1036
276||1142||TAIR accession (gene)||http://edamontology.org/data_1037
277||1605||Protein domain ID||http://edamontology.org/data_1038
278||277||SCOP domain identifier||http://edamontology.org/data_1039
279||177||EPS||http://edamontology.org/format_3466
281||176||GIF||http://edamontology.org/format_3467
280||3136||CATH domain ID||http://edamontology.org/data_1040
282||181||xls||http://edamontology.org/format_3468
283||176||CRAM||http://edamontology.org/format_3462
284||3136||CATH node ID||http://edamontology.org/data_1043
285||12||Kingdom name||http://edamontology.org/data_1044
287||177||JSON||http://edamontology.org/format_3464
286||278||SCOP concise classification string (sccs)||http://edamontology.org/data_1041
288||278||SCOP sunid||http://edamontology.org/data_1042
289||2833||URI||http://edamontology.org/data_1047
290||1605||Database ID||http://edamontology.org/data_1048
291||12||Species name||http://edamontology.org/data_1045
292||1023||Strain name||http://edamontology.org/data_1046
293||3745||Directory name||http://edamontology.org/data_1049
294||1825||Sample collections||http://edamontology.org/topic_3277
295||3761||smarts||http://edamontology.org/format_1200
296||1514||Enzyme identifier||http://edamontology.org/data_1010
297||981||EC number||http://edamontology.org/data_1011
298||392||Sequence position||http://edamontology.org/data_1016
299||392||Sequence range||http://edamontology.org/data_1017
300||3942||Nucleic acid feature identifier||http://edamontology.org/data_1018
301||3942||Protein feature identifier||http://edamontology.org/data_1019
302||246||Enzyme name||http://edamontology.org/data_1012
303||302||Restriction enzyme name||http://edamontology.org/data_1013
304||3942||Sequence position specification||http://edamontology.org/data_1014
305||948||Sequence feature ID||http://edamontology.org/data_1015
306||2990||Data security||http://edamontology.org/topic_3263
307||2099||Sequence feature qualifier||http://edamontology.org/data_1021
308||2099||Sequence feature label||http://edamontology.org/data_1022
309||2099||Sequence feature key||http://edamontology.org/data_1020
310||3942||Gene identifier (NCBI UniGene)||http://edamontology.org/data_1029
311||202||Gene ID (NCBI)||http://edamontology.org/data_1027
312||3942||Gene identifier (NCBI RefSeq)||http://edamontology.org/data_1028
313||1605||Gene identifier||http://edamontology.org/data_1025
314||2371||Gene symbol||http://edamontology.org/data_1026
315||948||EMBOSS Uniform Feature Object||http://edamontology.org/data_1023
316||3942||Codon name||http://edamontology.org/data_1024
317||838||XDE||http://www.ebi.ac.uk/efo/swo/SWO_0000446
318||4017||Wilcoxon||http://www.ebi.ac.uk/efo/swo/SWO_0000445
319||3942||obsolete_XML||http://www.ebi.ac.uk/efo/swo/SWO_0000448
320||838||XDotsReader||http://www.ebi.ac.uk/efo/swo/SWO_0000447
321||838||VanillaICE||http://www.ebi.ac.uk/efo/swo/SWO_0000442
322||4017||Variance-stabilizing transformation (VST) algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000441
323||4017||WilcEbam||http://www.ebi.ac.uk/efo/swo/SWO_0000444
324||4039||Xba.CQV and Xba.regions||http://www.ebi.ac.uk/efo/swo/SWO_0000449
325||3999||siRNA duplex prediction||http://edamontology.org/operation_2008
326||1206||Correlation||http://edamontology.org/correlation_3465
327||838||Array Comparative Genomic Hybridization||http://www.ebi.ac.uk/efo/swo/SWO_0000450
328||3145||single generalization specification||http://kt.ijs.si/panovp/OntoDM#OntoDM_419460
329||838||Acuity||http://www.ebi.ac.uk/efo/swo/SWO_0000451
330||4017||Theodore Ts o s||http://www.ebi.ac.uk/efo/swo/SWO_0000437
331||838||TargetSearch||http://www.ebi.ac.uk/efo/swo/SWO_0000435
332||3942||obsolete_TIFF image||http://www.ebi.ac.uk/efo/swo/SWO_0000434
333||838||TAS Software||http://www.ebi.ac.uk/efo/swo/SWO_0000432
334||838||Spotfire||http://www.ebi.ac.uk/efo/swo/SWO_0000430
335||838||TypeInfo||http://www.ebi.ac.uk/efo/swo/SWO_0000438
336||3617||ebwtl||http://edamontology.org/format_3491
337||177||Ensembl variation file format||http://edamontology.org/format_3499
338||838||altcdfenvs||http://www.ebi.ac.uk/efo/swo/SWO_0000463
339||838|| annotate ||http://www.ebi.ac.uk/efo/swo/SWO_0000466
340||838||annaffy||http://www.ebi.ac.uk/efo/swo/SWO_0000465
341||838||annotationTools||http://www.ebi.ac.uk/efo/swo/SWO_0000468
342||839||data annotation||http://www.ebi.ac.uk/efo/swo/SWO_0000467
343||1964||Annotation data packages||http://www.ebi.ac.uk/efo/swo/SWO_0000469
344||838|| apComplex ||http://www.ebi.ac.uk/efo/swo/SWO_0000470
345||181||BSML||http://edamontology.org/format_3487
347||838||aroma.light||http://www.ebi.ac.uk/efo/swo/SWO_0000471
346||177||GCG format variant||http://edamontology.org/format_3486
349||838||arrayMvout||http://www.ebi.ac.uk/efo/swo/SWO_0000472
348||346||RSF||http://edamontology.org/format_3485
350||838||arrayQuality||http://www.ebi.ac.uk/efo/swo/SWO_0000473
351||3617||ebwt||http://edamontology.org/format_3484
352||362|| affyPLM ||http://www.ebi.ac.uk/efo/swo/SWO_0000455
353||838||affyImGUI||http://www.ebi.ac.uk/efo/swo/SWO_0000454
354||838||affyContam||http://www.ebi.ac.uk/efo/swo/SWO_0000453
355||838||affxparser||http://www.ebi.ac.uk/efo/swo/SWO_0000452
356||838|| affycoretools ||http://www.ebi.ac.uk/efo/swo/SWO_0000459
357||838||affyTiling||http://www.ebi.ac.uk/efo/swo/SWO_0000458
358||838||affyQCReport||http://www.ebi.ac.uk/efo/swo/SWO_0000457
359||838||affyPara||http://www.ebi.ac.uk/efo/swo/SWO_0000456
360||3148||ensemble algorithm||http://kt.ijs.si/panovp/OntoDM#OntoDM_530819
361||177||Cytoscape input file format||http://edamontology.org/format_3477
362||838||affypdnn||http://www.ebi.ac.uk/efo/swo/SWO_0000461
363||137||Gene expression data format||http://edamontology.org/format_3476
364||177||TSV||http://edamontology.org/format_3475
365||838||affyio||http://www.ebi.ac.uk/efo/swo/SWO_0000460
366||177||R data frame||http://www.ebi.ac.uk/efo/swo/SWO_0000409
367||838||ArrayExpress Bioconductor||http://www.ebi.ac.uk/efo/swo/SWO_0000405
368||1964||Gene list||http://www.ebi.ac.uk/efo/swo/SWO_0000406
369||1964||Clustered data set||http://www.ebi.ac.uk/efo/swo/SWO_0000408
370||3942||Protein domain classification node||http://edamontology.org/data_3101
371||989||System metadata||http://edamontology.org/data_3106
372||948||Sequence feature name||http://edamontology.org/data_3107
373||1964||Experimental measurement||http://edamontology.org/data_3108
374||3728||CAS number||http://edamontology.org/data_3102
375||3728||ATC code||http://edamontology.org/data_3103
376||65||UNII||http://edamontology.org/data_3104
377||3942||Geotemporal metadata||http://edamontology.org/data_3105
378||838||Spot quantification||http://www.ebi.ac.uk/efo/swo/SWO_0000428
379||838||Spotfinder [TIGR]||http://www.ebi.ac.uk/efo/swo/SWO_0000429
380||838||scanning software||http://www.ebi.ac.uk/efo/swo/SWO_0000420
381||380||Scanning software G2565AA version A6.3.1||http://www.ebi.ac.uk/efo/swo/SWO_0000421
382||838||ShortRead||http://www.ebi.ac.uk/efo/swo/SWO_0000422
383||4017||Signaling Pathway Impact Analysis (SPIA) algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000423
384||838||Silicon Genetics Genespring||http://www.ebi.ac.uk/efo/swo/SWO_0000424
385||4017||Similarity score||http://www.ebi.ac.uk/efo/swo/SWO_0000425
386||4017|| Smith-Waterman ||http://www.ebi.ac.uk/efo/swo/SWO_0000426
387||838||ScanArray||http://www.ebi.ac.uk/efo/swo/SWO_0000418
388||387||ScanArray v3.1 software||http://www.ebi.ac.uk/efo/swo/SWO_0000419
389||838||ScISI||http://www.ebi.ac.uk/efo/swo/SWO_0000416
390||838||ScanAlyze||http://www.ebi.ac.uk/efo/swo/SWO_0000417
391||1965||R language||http://www.ebi.ac.uk/efo/swo/SWO_0000415
392||433||Sequence attribute||http://edamontology.org/data_2534
393||3942||Nucleic acid features report (STS)||http://edamontology.org/data_3139
394||1674||Sequence tag profile||http://edamontology.org/data_2535
396||373||Mass spectrometry data||http://edamontology.org/data_2536
395||3768||Transition matrix||http://edamontology.org/data_3354
397||373||Protein structure raw data||http://edamontology.org/data_2537
398||3668||Organism report||http://edamontology.org/data_2530
400||3942||Nucleic acid features report (signal or transit peptide)||http://edamontology.org/data_3135
399||3668||Experiment report||http://edamontology.org/data_2531
401||3942||Transcriptional features (report)||http://edamontology.org/data_3138
402||3942||Non-coding RNA||http://edamontology.org/data_3137
403||3942||Nucleic acid features report (mutation)||http://edamontology.org/data_2533
404||3942||Nucleic acid features (d-loop)||http://edamontology.org/data_3132
405||3942||Sequence motif matches (nucleic acid)||http://edamontology.org/data_3131
406||2434||Gene transcript report||http://edamontology.org/data_3134
407||3942||Nucleic acid features (stem loop)||http://edamontology.org/data_3133
408||1669||Hidden Markov model||http://edamontology.org/data_3356
409||177||EMBOSS repeat||http://edamontology.org/format_1297
410||3768||Emission matrix||http://edamontology.org/data_3355
411||3942||Sequence motif matches (protein)||http://edamontology.org/data_3130
412||177||Sanger inverted repeats||http://edamontology.org/format_1296
413||1605||Format identifier||http://edamontology.org/data_3358
414||177||quicktandem||http://edamontology.org/format_1295
415||3942||Alignment data||http://edamontology.org/data_2539
416||1605||Mutation identifier||http://edamontology.org/data_2538
417||3942||Nucleic acid data||http://edamontology.org/data_2525
418||1964||Article data||http://edamontology.org/data_2526
419||1964||Phylogenetic data||http://edamontology.org/data_2523
420||3942||Protein data||http://edamontology.org/data_2524
421||3942||Map data||http://edamontology.org/data_2522
422||3763||Gene family report||http://edamontology.org/data_3148
423||3942||Mass spectrometry experiment||http://edamontology.org/data_3147
424||3942||SCOP species||http://edamontology.org/data_3146
425||3942||SCOP protein||http://edamontology.org/data_3145
426||3942||SCOP family||http://edamontology.org/data_3144
427||3942||SCOP superfamily||http://edamontology.org/data_3143
428||3942||SCOP fold||http://edamontology.org/data_3142
429||3942||SCOP class||http://edamontology.org/data_3141
430||3942||Nucleic acid features (immunoglobulin gene structure)||http://edamontology.org/data_3140
431||3942||Molecule report||http://edamontology.org/data_2529
432||3942||Molecular data||http://edamontology.org/data_2528
433||1964||Parameter||http://edamontology.org/data_2527
434||989||Sample annotation||http://edamontology.org/data_3113
435||3942||Microarray protocol annotation||http://edamontology.org/data_3116
436||966||Microarray metadata||http://edamontology.org/data_3115
437||3942||Protein features report (topological domains)||http://edamontology.org/data_3118
438||966||Microarray hybridisation data||http://edamontology.org/data_3117
439||3942||Sequence features (compositionally-biased regions)||http://edamontology.org/data_3119
440||373||Raw microarray data||http://edamontology.org/data_3110
441||966||Gene expression matrix||http://edamontology.org/data_3112
442||438||Processed microarray data||http://edamontology.org/data_3111
443||3942||Nucleic acid features report (replication and recombination)||http://edamontology.org/data_3127
444||3942||Nucleic acid repeats (report)||http://edamontology.org/data_3126
445||3942||Nucleic acid features report (binding)||http://edamontology.org/data_3125
446||3942||Protein features report (repeats)||http://edamontology.org/data_3129
447||3762||Nucleic acid structure report||http://edamontology.org/data_3128
448||3942||Nucleic acid features report (expression signal)||http://edamontology.org/data_3123
449||3942||Nucleic acid features (difference and change)||http://edamontology.org/data_3122
450||838|| cellHTS2 ||http://www.ebi.ac.uk/efo/swo/SWO_0000495
451||838|| cellHTS ||http://www.ebi.ac.uk/efo/swo/SWO_0000494
452||1681||cdt||http://www.ebi.ac.uk/efo/swo/SWO_0000493
453||838|| bridge ||http://www.ebi.ac.uk/efo/swo/SWO_0000491
454||4017||Bootstrap||http://www.ebi.ac.uk/efo/swo/SWO_0000490
456||838||biomaRT||http://www.ebi.ac.uk/efo/swo/SWO_0000489
455||2750||Sequence assembly report||http://edamontology.org/data_3181
457||838|| biocGraph ||http://www.ebi.ac.uk/efo/swo/SWO_0000487
458||838|| biocViews ||http://www.ebi.ac.uk/efo/swo/SWO_0000488
459||838||bioDist||http://www.ebi.ac.uk/efo/swo/SWO_0000485
460||838|| biocDatasets ||http://www.ebi.ac.uk/efo/swo/SWO_0000486
461||838||bgafun||http://www.ebi.ac.uk/efo/swo/SWO_0000482
462||838|| betr ||http://www.ebi.ac.uk/efo/swo/SWO_0000481
463||1964||Bitmap object||http://www.ebi.ac.uk/efo/swo/SWO_0000484
464||838||bgx||http://www.ebi.ac.uk/efo/swo/SWO_0000483
465||838|| beadarraySNP ||http://www.ebi.ac.uk/efo/swo/SWO_0000480
466||4017||AvgNRRs||http://www.ebi.ac.uk/efo/swo/SWO_0000478
467||838|| beadarray ||http://www.ebi.ac.uk/efo/swo/SWO_0000479
468||838||arrayQualityMetrics||http://www.ebi.ac.uk/efo/swo/SWO_0000474
469||470||arrayWoRx 2.0||http://www.ebi.ac.uk/efo/swo/SWO_0000475
470||838||arrayWoRx||http://www.ebi.ac.uk/efo/swo/SWO_0000476
471||4017||Associative T method||http://www.ebi.ac.uk/efo/swo/SWO_0000477
472||2035||Protein image||http://edamontology.org/data_3153
473||633||Protein alignment||http://edamontology.org/data_3154
474||3942||NGS experiment||http://edamontology.org/data_3165
475||838||cghMCR||http://www.ebi.ac.uk/efo/swo/SWO_0000496
476||4039||chamber slide format||http://www.ebi.ac.uk/efo/swo/SWO_0000497
477||177||cls||http://www.ebi.ac.uk/efo/swo/SWO_0000498
478||838|| clusterStab ||http://www.ebi.ac.uk/efo/swo/SWO_0000499
479||3942||Proteome||http://edamontology.org/topic_0644
480||3942||Low complexity sequences||http://edamontology.org/topic_0642
481||3942||Repeat sequences||http://edamontology.org/topic_0641
482||71||GO concept ID||http://edamontology.org/data_1176
484||177||JASPAR format||http://edamontology.org/format_1367
483||71||BioPax concept ID||http://edamontology.org/data_1175
486||177||prosite-profile||http://edamontology.org/format_1366
485||3729||ChEBI ID||http://edamontology.org/data_1174
487||3729||ChemSpider ID||http://edamontology.org/data_1173
488||872||PubChem CID||http://edamontology.org/data_1172
489||3723||BioModel ID||http://edamontology.org/data_1171
490||66||Biological model name||http://edamontology.org/data_1170
492||1443||Protein function prediction||http://edamontology.org/operation_1777
491||177||meme-motif||http://edamontology.org/format_1360
493||3942||Annotation retrieval||http://edamontology.org/operation_1774
494||71||NCBI taxonomy ID||http://edamontology.org/data_1179
495||71||HGNC concept ID||http://edamontology.org/data_1178
496||1108||Protein function comparison||http://edamontology.org/operation_1778
497||71||MeSH concept ID||http://edamontology.org/data_1177
498||3942||Specific protein resources||http://edamontology.org/topic_0635
499||1763||Pathology||http://edamontology.org/topic_0634
500||262||Taxonomy||http://edamontology.org/topic_0637
501||2331||Sequence design||http://edamontology.org/topic_0632
502||1603||Tool name||http://edamontology.org/data_1190
503||3942||Protein sequence analysis||http://edamontology.org/topic_0639
504||177||HMMER Dirichlet prior||http://edamontology.org/format_1349
506||71||MGED concept ID||http://edamontology.org/data_1185
505||611||RFLP||http://edamontology.org/topic_2869
507||71||ChEBI concept ID||http://edamontology.org/data_1184
508||177||EMBOSS sequence pattern||http://edamontology.org/format_1357
510||69||PubMed ID||http://edamontology.org/data_1187
509||611||VNTR||http://edamontology.org/topic_2867
513||4007||organization||http://purl.obolibrary.org/obo/OBI_0000245
511||177||prosite-pattern||http://edamontology.org/format_1356
514||71||myGrid concept ID||http://edamontology.org/data_1186
512||611||Microsatellites||http://edamontology.org/topic_2868
516||177||HMMER emission and transition||http://edamontology.org/format_1351
515||71||UMLS concept ID||http://edamontology.org/data_1181
518||177||MEME Dirichlet prior||http://edamontology.org/format_1350
517||71||Plant Ontology concept ID||http://edamontology.org/data_1180
519||71||EMAP concept ID||http://edamontology.org/data_1183
520||71||FMA concept ID||http://edamontology.org/data_1182
521||3942||Nucleic acid sequence analysis||http://edamontology.org/topic_0640
523||69||Medline UI||http://edamontology.org/data_1189
522||3942||Nucleic acid folding family identification||http://edamontology.org/operation_1768
524||69||DOI||http://edamontology.org/data_1188
525||2890||Nucleic acid folding energy calculation||http://edamontology.org/operation_1769
526||1604||Genomics||http://edamontology.org/topic_0622
527||2994||Organisms||http://edamontology.org/topic_0621
528||1804||Drugs and target structures||http://edamontology.org/topic_0620
529||2965||Genotype and phenotype||http://edamontology.org/topic_0625
530||1353||Chromosomes||http://edamontology.org/topic_0624
531||2965||Gene families||http://edamontology.org/topic_0623
532||3942||Gene expression and microarray||http://edamontology.org/topic_0629
533||177||dhf||http://edamontology.org/format_1336
534||177||lhf||http://edamontology.org/format_1337
535||1542||Toxicology||http://edamontology.org/topic_2840
537||994||Immunoproteins, genes and antigens||http://edamontology.org/topic_2830
538||502||Tool name (EMBOSS)||http://edamontology.org/data_1194
536||539||InterPro protein view report format||http://edamontology.org/format_1342
539||177||InterPro hits format||http://edamontology.org/format_1341
540||502||Tool name (FASTA)||http://edamontology.org/data_1193
541||502||Tool name (BLAST)||http://edamontology.org/data_1192
542||502||Tool name (signature)||http://edamontology.org/data_1191
544||502||Tool name (EMBASSY package)||http://edamontology.org/data_1195
543||539||InterPro match table format||http://edamontology.org/format_1343
545||3942||Molecules||http://edamontology.org/topic_2839
546||1513||Electron microscopy||http://edamontology.org/topic_0611
547||2994||Ecology||http://edamontology.org/topic_0610
548||3087||Peptides and amino acids||http://edamontology.org/topic_0613
549||3942||Cell cycle||http://edamontology.org/topic_0612
550||3942||Ribosomes||http://edamontology.org/topic_0617
551||3942||Organelles||http://edamontology.org/topic_0616
552||3942||Scents||http://edamontology.org/topic_0618
554||3942||Structural clustering||http://edamontology.org/topic_2844
553||2697||Gene regulatory network analysis||http://edamontology.org/operation_1781
555||3942||High-throughput sequencing||http://edamontology.org/topic_2842
557||177||BLAST results||http://edamontology.org/format_1333
556||3942||Disease (specific)||http://edamontology.org/topic_2847
558||177||FASTA search results format||http://edamontology.org/format_1332
559||3942||Sequence submission||http://edamontology.org/operation_1780
560||177||Smith-Waterman format||http://edamontology.org/format_1335
561||177||mspcrunch||http://edamontology.org/format_1334
562||568||Gene regulatory networks||http://edamontology.org/topic_2846
563||2990||Laboratory information management||http://edamontology.org/topic_0607
564||3942||Cell and tissue culture||http://edamontology.org/topic_0608
565||3942||Informatics||http://edamontology.org/topic_0605
566||3942||Literature data resources||http://edamontology.org/topic_0606
567||2796||Protein modifications||http://edamontology.org/topic_0601
568||2994||Molecular interactions, pathways and networks||http://edamontology.org/topic_0602
569||31||MMDB ID||http://edamontology.org/data_2667
570||277||CDD ID||http://edamontology.org/data_2666
571||3723||ModelDB ID||http://edamontology.org/data_2669
572||35||iRefIndex ID||http://edamontology.org/data_2668
573||65||Carbohydrate identifier||http://edamontology.org/data_2663
574||3726||T3DB ID||http://edamontology.org/data_2662
575||2074||LipidBank ID||http://edamontology.org/data_2665
576||2080||GlycomeDB ID||http://edamontology.org/data_2664
577||2216||dynamic Bayesian network model||http://www.ebi.ac.uk/swo/algorithm/SWO_4000005
578||4017||SAEM||http://www.ebi.ac.uk/swo/algorithm/SWO_4000004
579||3756||BioNumbers ID||http://edamontology.org/data_2660
580||3942||Ensembl ID ( Echinops telfairi )||http://edamontology.org/data_2679
581||1467||HMMER-aln||http://edamontology.org/format_1391
582||3942||Ensembl ID ( Dasypus novemcinctus )||http://edamontology.org/data_2678
583||177||DIALIGN format||http://edamontology.org/format_1392
585||3942||Ensembl ID ( Danio rerio )||http://edamontology.org/data_2677
584||177||daf||http://edamontology.org/format_1393
586||3942||Ensembl ID ( Ciona savignyi )||http://edamontology.org/data_2676
587||3942||Ensembl ID ( Ciona intestinalis )||http://edamontology.org/data_2675
588||3942||Ensembl ID ( Cavia porcellus )||http://edamontology.org/data_2674
589||3942||Ensembl ID ( Canis familiaris )||http://edamontology.org/data_2673
590||3942||Ensembl ID ( Bos taurus )||http://edamontology.org/data_2672
591||3942||Ensembl ID (Homo sapiens)||http://edamontology.org/data_2671
592||1006||Pathway ID (DQCS)||http://edamontology.org/data_2670
593||3942||Ensembl ID ( Loxodonta africana )||http://edamontology.org/data_2685
594||3942||Ensembl ID ( Homo sapiens )_594||http://edamontology.org/data_2684
595||3942||Ensembl ID ( Monodelphis domestica )||http://edamontology.org/data_2687
596||3942||Ensembl ID ( Macaca mulatta )||http://edamontology.org/data_2686
597||3942||Ensembl ID ( Myotis lucifugus )||http://edamontology.org/data_2689
598||3942||Ensembl ID ( Mus musculus )||http://edamontology.org/data_2688
599||3942||Ensembl ID ( Felis catus )||http://edamontology.org/data_2681
600||3942||Ensembl ID ( Erinaceus europaeus )||http://edamontology.org/data_2680
601||3942||Ensembl ID ( Gasterosteus aculeatus )||http://edamontology.org/data_2683
602||3942||Ensembl ID ( Gallus gallus )||http://edamontology.org/data_2682
603||177||MEME background Markov model||http://edamontology.org/format_1369
604||3942||Ensembl ID ( Tupaia belangeri )||http://edamontology.org/data_2698
605||3942||Ensembl ID ( Takifugu rubripes )||http://edamontology.org/data_2697
606||3942||Ensembl ID ( Spermophilus tridecemlineatus )||http://edamontology.org/data_2696
607||3942||Ensembl ID ( Rattus norvegicus )||http://edamontology.org/data_2695
608||177||HMMER format||http://edamontology.org/format_1370
609||3942||Ensembl ID ( Xenopus tropicalis )||http://edamontology.org/data_2699
610||3942||Ensembl ID ( Ornithorhynchus anatinus )||http://edamontology.org/data_2690
611||1353||DNA polymorphism||http://edamontology.org/topic_2885
612||3942||Ensembl ID ( Pan troglodytes )||http://edamontology.org/data_2694
613||3942||Ensembl ID ( Otolemur garnettii )||http://edamontology.org/data_2693
614||3942||Ensembl ID ( Oryzias latipes )||http://edamontology.org/data_2692
615||3942||Ensembl ID ( Oryctolagus cuniculus )||http://edamontology.org/data_2691
616||181||docx||http://edamontology.org/format_3506
617||137||Document format||http://edamontology.org/format_3507
618||176||PDF||http://edamontology.org/format_3508
619||2384||dbSNP ID||http://edamontology.org/data_1106
620||2382||dbEST accession||http://edamontology.org/data_1105
621||649||Sequence cluster ID (UniGene)||http://edamontology.org/data_1104
622||209||EMBL/GenBank/DDBJ ID||http://edamontology.org/data_1103
623||2101||Gramene primary identifier||http://edamontology.org/data_1102
624||3942||TREMBL accession||http://edamontology.org/data_1101
625||206||PIR identifier||http://edamontology.org/data_1100
627||1604||Metabolomics||http://edamontology.org/topic_3172
626||3775||Atomic property||http://edamontology.org/data_1917
628||265||Epigenomics||http://edamontology.org/topic_3173
630||3942||RNA-Seq||http://edamontology.org/topic_3170
629||839||database creation||http://www.ebi.ac.uk/efo/swo/SWO_0000509
632||4039||covdesc file||http://www.ebi.ac.uk/efo/swo/SWO_0000508
631||3942||DNA methylation||http://edamontology.org/topic_3171
633||1964||Alignment||http://edamontology.org/data_1916
634||838||cosmoGUI||http://www.ebi.ac.uk/efo/swo/SWO_0000507
635||838||cosmo||http://www.ebi.ac.uk/efo/swo/SWO_0000506
636||838||copa||http://www.ebi.ac.uk/efo/swo/SWO_0000505
637||838||convert||http://www.ebi.ac.uk/efo/swo/SWO_0000504
638||4017||Concordance||http://www.ebi.ac.uk/efo/swo/SWO_0000503
639||839||dataset comparison||http://www.ebi.ac.uk/efo/swo/SWO_0000502
641||3942||RNA-Seq alignment||http://edamontology.org/topic_3178
640||838|| codelink ||http://www.ebi.ac.uk/efo/swo/SWO_0000501
642||3942||obsolete_Clustering algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000500
643||3942||ChIP-on-chip||http://edamontology.org/topic_3179
644||1353||DNA packaging||http://edamontology.org/topic_3176
645||3942||DNA-Seq||http://edamontology.org/topic_3177
646||526||Metagenomics||http://edamontology.org/topic_3174
647||530||Structural variation||http://edamontology.org/topic_3175
648||3942||EMBOSS sequence type||http://edamontology.org/data_1110
649||140||Sequence cluster ID||http://edamontology.org/data_1112
650||3942||EMBOSS listfile||http://edamontology.org/data_1111
651||1605||Sequence motif identifier||http://edamontology.org/data_1114
652||649||Sequence cluster ID (COG)||http://edamontology.org/data_1113
653||651||ELM ID||http://edamontology.org/data_1116
654||1605||Sequence profile ID||http://edamontology.org/data_1115
655||654||HMMER hidden Markov model ID||http://edamontology.org/data_1118
656||651||Prosite accession number||http://edamontology.org/data_1117
658||190||NCBI locus tag||http://edamontology.org/data_1900
657||654||JASPAR profile ID||http://edamontology.org/data_1119
659||190||Locus ID (SGD)||http://edamontology.org/data_1901
660||190||Locus ID (MMP)||http://edamontology.org/data_1902
661||190||Locus ID (DictyBase)||http://edamontology.org/data_1903
662||190||Locus ID (EntrezGene)||http://edamontology.org/data_1904
663||190||Locus ID (MaizeGDB)||http://edamontology.org/data_1905
664||3942||Quantitative trait locus||http://edamontology.org/data_1906
665||2386||Gene ID (KOME)||http://edamontology.org/data_1907
666||190||Locus ID (Tropgene)||http://edamontology.org/data_1908
667||3942||BLAST sequence alignment type||http://edamontology.org/data_1121
668||3942||Sequence alignment type||http://edamontology.org/data_1120
669||3942||Comparison matrix type||http://edamontology.org/data_1125
670||126||TreeFam accession number||http://edamontology.org/data_1124
671||126||TreeBASE study accession number||http://edamontology.org/data_1123
672||3942||Phylogenetic tree type||http://edamontology.org/data_1122
673||35||BIND accession number||http://edamontology.org/data_1129
674||27||AAindex ID||http://edamontology.org/data_1128
675||31||PDB ID||http://edamontology.org/data_1127
676||138||Comparison matrix name||http://edamontology.org/data_1126
677||2108||PRINTS code||http://edamontology.org/data_1137
678||2108||Pfam accession number||http://edamontology.org/data_1138
679||2108||SMART accession number||http://edamontology.org/data_1139
680||2108||InterPro accession||http://edamontology.org/data_1133
681||680||InterPro secondary accession||http://edamontology.org/data_1134
682||2108||Gene3D ID||http://edamontology.org/data_1135
683||2108||PIRSF ID||http://edamontology.org/data_1136
684||35||IntAct accession number||http://edamontology.org/data_1130
685||34||Protein family name||http://edamontology.org/data_1131
686||685||InterPro entry name||http://edamontology.org/data_1132
687||2845||Sequence tagged sites||http://edamontology.org/topic_3139
688||177||REBASE restriction sites||http://edamontology.org/format_1320
689||177||restover format||http://edamontology.org/format_1319
690||177||restrict format||http://edamontology.org/format_1318
691||177||est2genome format||http://edamontology.org/format_1316
692||5||GermOnline ID||http://edamontology.org/data_1148
693||5||EMAGE ID||http://edamontology.org/data_1149
694||16||EMDB ID||http://edamontology.org/data_1146
695||5||GEO accession number||http://edamontology.org/data_1147
696||18||ArrayExpress accession number||http://edamontology.org/data_1144
697||18||PRIDE experiment accession number||http://edamontology.org/data_1145
698||2108||ProDom accession number||http://edamontology.org/data_1142
699||2107||TRANSFAC accession number||http://edamontology.org/data_1143
700||2108||Superfamily hidden Markov model number||http://edamontology.org/data_1140
701||2108||TIGRFam ID||http://edamontology.org/data_1141
702||783||DNA replication and recombination||http://edamontology.org/topic_3127
703||2765||Signal or transit peptide||http://edamontology.org/topic_3135
704||1006||Pathway ID (reactome)||http://edamontology.org/data_1155
705||3942||Pathway ID (aMAZE)||http://edamontology.org/data_1156
706||1006||Pathway ID (BioCyc)||http://edamontology.org/data_1157
707||1006||Pathway ID (INOH)||http://edamontology.org/data_1158
708||1006||Pathway ID (PATIKA)||http://edamontology.org/data_1159
709||1605||Disease ID||http://edamontology.org/data_1150
710||60||HGVbase ID||http://edamontology.org/data_1151
711||3942||HIVDB identifier||http://edamontology.org/data_1152
712||60||OMIM ID||http://edamontology.org/data_1153
713||2122||KEGG object identifier||http://edamontology.org/data_1154
714||1856||Sequencing||http://edamontology.org/topic_3168
715||3942||ChIP-seq||http://edamontology.org/topic_3169
716||724||MIRIAM data type synonymous name||http://edamontology.org/data_1166
717||63||Taverna workflow ID||http://edamontology.org/data_1167
719||1205||Sequence tagged site (STS) mapping||http://edamontology.org/operation_2871
718||1006||Pathway ID (CPDB)||http://edamontology.org/data_1160
720||1006||Pathway ID (Panther)||http://edamontology.org/data_1161
721||289||MIRIAM URI||http://edamontology.org/data_1164
722||724||MIRIAM data type primary name||http://edamontology.org/data_1165
723||2070||MIRIAM identifier||http://edamontology.org/data_1162
724||2475||MIRIAM data type name||http://edamontology.org/data_1163
725||760||EBI Clustal Omega Web Tool||http://www.ebi.ac.uk/swo/SWO_0000059
726||761||ClustalX 2.1||http://www.ebi.ac.uk/swo/SWO_0000057
727||760||EBI Clustal W2 Web Tool||http://www.ebi.ac.uk/swo/SWO_0000058
728||759||Clustal Omega 1.1||http://www.ebi.ac.uk/swo/SWO_0000055
729||762||ClustalW 2.1||http://www.ebi.ac.uk/swo/SWO_0000056
730||3942||obsolete_.java file||http://www.ebi.ac.uk/efo/swo/SWO_0000585
731||4017||Iterative local regression and model selection||http://www.ebi.ac.uk/efo/swo/SWO_0000584
732||4017||k-cores||http://www.ebi.ac.uk/efo/swo/SWO_0000587
733||3942||obsolete_jpeg||http://www.ebi.ac.uk/efo/swo/SWO_0000586
734||4017||k-nearest neighbour classification||http://www.ebi.ac.uk/efo/swo/SWO_0000589
735||4017||k-means||http://www.ebi.ac.uk/efo/swo/SWO_0000588
736||838||keggorth||http://www.ebi.ac.uk/efo/swo/SWO_0000590
737||838||lapmix||http://www.ebi.ac.uk/efo/swo/SWO_0000591
738||4017||Likelihood method||http://www.ebi.ac.uk/efo/swo/SWO_0000592
739||838||limma||http://www.ebi.ac.uk/efo/swo/SWO_0000593
740||838||limmaGUI||http://www.ebi.ac.uk/efo/swo/SWO_0000594
741||742||CRG TCoffee||http://www.ebi.ac.uk/swo/SWO_0000065
742||838||TCoffee||http://www.ebi.ac.uk/swo/SWO_0000064
743||746||Drive5 MUSCLE||http://www.ebi.ac.uk/swo/SWO_0000063
744||743||MUSCLE 3.8.31||http://www.ebi.ac.uk/swo/SWO_0000062
745||746||EBI Muscle Web Tool||http://www.ebi.ac.uk/swo/SWO_0000061
746||838||MUSCLE||http://www.ebi.ac.uk/swo/SWO_0000060
747||2194||BLAST  2.2.26||http://www.ebi.ac.uk/swo/SWO_0000044
748||4017||Hypergeometric enrichment||http://www.ebi.ac.uk/efo/swo/SWO_0000576
749||1964||HTML report||http://www.ebi.ac.uk/efo/swo/SWO_0000575
750||838||hopach||http://www.ebi.ac.uk/efo/swo/SWO_0000574
751||4017||Hierarchical clustering||http://www.ebi.ac.uk/efo/swo/SWO_0000573
752||838||idiogram||http://www.ebi.ac.uk/efo/swo/SWO_0000579
753||838||Icens||http://www.ebi.ac.uk/efo/swo/SWO_0000578
754||838||hypergraph||http://www.ebi.ac.uk/efo/swo/SWO_0000577
755||838||iterativeBMA||http://www.ebi.ac.uk/efo/swo/SWO_0000582
756||838||iterativeBMAsurv||http://www.ebi.ac.uk/efo/swo/SWO_0000583
757||3942||obsolete_Image||http://www.ebi.ac.uk/efo/swo/SWO_0000580
758||838||impute||http://www.ebi.ac.uk/efo/swo/SWO_0000581
759||760||Clustal Omega||http://www.ebi.ac.uk/swo/SWO_0000052
760||838||Clustal||http://www.ebi.ac.uk/swo/SWO_0000051
761||760||ClustalX||http://www.ebi.ac.uk/swo/SWO_0000054
762||760||ClustalW||http://www.ebi.ac.uk/swo/SWO_0000053
763||838||Ensembl||http://www.ebi.ac.uk/swo/SWO_0000050
764||838||graph||http://www.ebi.ac.uk/efo/swo/SWO_0000567
765||1681||gpr format||http://www.ebi.ac.uk/efo/swo/SWO_0000566
766||1681||gtr||http://www.ebi.ac.uk/efo/swo/SWO_0000569
767||838||goProfiles||http://www.ebi.ac.uk/efo/swo/SWO_0000563
768||4039||gmt format||http://www.ebi.ac.uk/efo/swo/SWO_0000562
769||838||gpls||http://www.ebi.ac.uk/efo/swo/SWO_0000565
770||838||goTools||http://www.ebi.ac.uk/efo/swo/SWO_0000564
771||181||gxl format||http://www.ebi.ac.uk/efo/swo/SWO_0000570
772||3942||obsolete_Heatmap||http://www.ebi.ac.uk/efo/swo/SWO_0000571
773||838||hexbin||http://www.ebi.ac.uk/efo/swo/SWO_0000572
774||838||Linux||http://www.ebi.ac.uk/swo/SWO_0000022
775||777||Microsoft Word 2001||http://www.ebi.ac.uk/swo/SWO_0000023
776||838||Adobe Illustrator 10||http://www.ebi.ac.uk/swo/SWO_0000024
777||838||Microsoft Word||http://www.ebi.ac.uk/swo/SWO_0000025
778||838||software with image input||http://www.ebi.ac.uk/swo/SWO_0000026
779||838||OBO-Edit||http://www.ebi.ac.uk/swo/SWO_0000027
780||838||ontology engineering software||http://www.ebi.ac.uk/swo/SWO_0000028
781||3942||obsolete_gff format||http://www.ebi.ac.uk/efo/swo/SWO_0000559
782||838||Microsoft developed software||http://www.ebi.ac.uk/swo/SWO_0000029
783||1353||DNA binding sites||http://edamontology.org/topic_3125
784||838||genomeIntervals||http://www.ebi.ac.uk/efo/swo/SWO_0000558
785||838||geneplotter||http://www.ebi.ac.uk/efo/swo/SWO_0000557
786||2845||Nucleic acid repeats||http://edamontology.org/topic_3126
787||838||genemeta||http://www.ebi.ac.uk/efo/swo/SWO_0000556
788||2746||Expression signals||http://edamontology.org/topic_3123
789||838||genefilter||http://www.ebi.ac.uk/efo/swo/SWO_0000555
790||1964||Gene expression dataset||http://www.ebi.ac.uk/efo/swo/SWO_0000554
791||839||gene expression analysis||http://www.ebi.ac.uk/efo/swo/SWO_0000553
792||4017||Gene array analysis algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000552
794||1409||Protein variants||http://edamontology.org/topic_3120
793||838||geneRecommender||http://www.ebi.ac.uk/efo/swo/SWO_0000551
795||4017||Global test||http://www.ebi.ac.uk/efo/swo/SWO_0000560
796||838||globaltest||http://www.ebi.ac.uk/efo/swo/SWO_0000561
797||3045||Protein topological domains||http://edamontology.org/topic_3118
798||838||software with command line interface||http://www.ebi.ac.uk/swo/SWO_0000030
799||838||Smultron||http://www.ebi.ac.uk/swo/SWO_0000031
800||838||flowQ||http://www.ebi.ac.uk/efo/swo/SWO_0000540
801||838||flowStats||http://www.ebi.ac.uk/efo/swo/SWO_0000541
802||838||flowUtils||http://www.ebi.ac.uk/efo/swo/SWO_0000542
803||838||flowViz||http://www.ebi.ac.uk/efo/swo/SWO_0000543
804||838||gaga||http://www.ebi.ac.uk/efo/swo/SWO_0000544
805||838|| gaggle ||http://www.ebi.ac.uk/efo/swo/SWO_0000545
806||838||gcRMA quantification||http://www.ebi.ac.uk/efo/swo/SWO_0000546
808||838||STARLIMS||http://www.ebi.ac.uk/swo/SWO_0000019
807||838||gcrma||http://www.ebi.ac.uk/efo/swo/SWO_0000547
810||831||MATLAB 7.12||http://www.ebi.ac.uk/swo/SWO_0000018
809||1681||gct||http://www.ebi.ac.uk/efo/swo/SWO_0000548
812||838|| genArise ||http://www.ebi.ac.uk/efo/swo/SWO_0000549
811||831||MATLAB 6||http://www.ebi.ac.uk/swo/SWO_0000017
813||831||MATLAB 7||http://www.ebi.ac.uk/swo/SWO_0000016
814||2502||Microsoft Excel 2002||http://www.ebi.ac.uk/swo/SWO_0000015
815||2502||Microsoft Excel 2003||http://www.ebi.ac.uk/swo/SWO_0000014
816||838||COPASI||http://www.ebi.ac.uk/swo/SWO_0000013
817||1965||Java||http://www.ebi.ac.uk/swo/SWO_0000012
818||838||IntelliJ IDEA||http://www.ebi.ac.uk/swo/SWO_0000011
819||838||Unix||http://www.ebi.ac.uk/swo/SWO_0000020
820||838||operating system||http://www.ebi.ac.uk/swo/SWO_0000021
821||1646||Genome index||http://edamontology.org/data_3210
822||838||gene2pathway||http://www.ebi.ac.uk/efo/swo/SWO_0000550
823||4017||f-test||http://www.ebi.ac.uk/efo/swo/SWO_0000531
824||838||factDesign||http://www.ebi.ac.uk/efo/swo/SWO_0000532
825||838|| externalVector ||http://www.ebi.ac.uk/efo/swo/SWO_0000530
826||838||Kakadu||http://www.ebi.ac.uk/swo/SWO_0000009
827||838||flagme||http://www.ebi.ac.uk/efo/swo/SWO_0000536
828||1965||Racket||http://www.ebi.ac.uk/swo/SWO_0000008
829||838||fbat||http://www.ebi.ac.uk/efo/swo/SWO_0000533
830||838||fdrame||http://www.ebi.ac.uk/efo/swo/SWO_0000534
831||838||MATLAB||http://www.ebi.ac.uk/swo/SWO_0000005
832||838||flowFlowJo||http://www.ebi.ac.uk/efo/swo/SWO_0000539
833||2502||Microsoft Excel 2007||http://www.ebi.ac.uk/swo/SWO_0000004
834||838||flowClust||http://www.ebi.ac.uk/efo/swo/SWO_0000537
835||838||OmniOutliner||http://www.ebi.ac.uk/swo/SWO_0000007
837||838||Protege 4||http://www.ebi.ac.uk/swo/SWO_0000006
836||838||flowCore||http://www.ebi.ac.uk/efo/swo/SWO_0000538
838||4024||software||http://www.ebi.ac.uk/swo/SWO_0000001
839||4038||information processing||http://www.ebi.ac.uk/swo/SWO_0000003
840||4024||software license||http://www.ebi.ac.uk/swo/SWO_0000002
841||838||WordStar||http://www.ebi.ac.uk/swo/SWO_0000010
842||838|| dualKS ||http://www.ebi.ac.uk/efo/swo/SWO_0000522
843||838||dyebias||http://www.ebi.ac.uk/efo/swo/SWO_0000523
844||4017||Dynamic programming algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000524
845||838||ecolitk||http://www.ebi.ac.uk/efo/swo/SWO_0000525
846||838|| diffGeneAnalysis ||http://www.ebi.ac.uk/efo/swo/SWO_0000520
847||838|| domainsignatures ||http://www.ebi.ac.uk/efo/swo/SWO_0000521
848||838||edd||http://www.ebi.ac.uk/efo/swo/SWO_0000526
849||838|| edgeR ||http://www.ebi.ac.uk/efo/swo/SWO_0000527
850||838||exonmap||http://www.ebi.ac.uk/efo/swo/SWO_0000528
851||838|| explorase ||http://www.ebi.ac.uk/efo/swo/SWO_0000529
852||838||dChip||http://www.ebi.ac.uk/efo/swo/SWO_0000513
853||838||daMA||http://www.ebi.ac.uk/efo/swo/SWO_0000514
854||838||ctc||http://www.ebi.ac.uk/efo/swo/SWO_0000512
855||838||crlmm||http://www.ebi.ac.uk/efo/swo/SWO_0000510
857||4039||design file||http://www.ebi.ac.uk/efo/swo/SWO_0000519
856||3286||Alignment||http://edamontology.org/operation_2928
858||1210||Protein fragment weight comparison||http://edamontology.org/operation_2929
859||177||dcf||http://www.ebi.ac.uk/efo/swo/SWO_0000518
860||4039||.data||http://www.ebi.ac.uk/efo/swo/SWO_0000516
861||4017||data visualization algorithm||http://kt.ijs.si/panovp/OntoDM#OntoDM-KDD_511616
862||1605||Mobile genetic element ID||http://edamontology.org/data_2630
863||862||ACLAME ID||http://edamontology.org/data_2631
864||2122||SGD ID||http://edamontology.org/data_2632
865||1605||Book ID||http://edamontology.org/data_2633
866||865||ISBN||http://edamontology.org/data_2634
867||3729||Compound ID (3DMET)||http://edamontology.org/data_2635
868||35||MatrixDB interaction ID||http://edamontology.org/data_2636
869||872||PubChem bioassay ID||http://edamontology.org/data_2638
870||1006||cPath ID||http://edamontology.org/data_2637
871||3942||Sequence motif or profile||http://edamontology.org/topic_0598
872||2122||PubChem ID||http://edamontology.org/data_2639
873||3942||Gene homology (report)||http://edamontology.org/data_3269
874||3942||Sequence feature type||http://edamontology.org/data_3268
875||1136||Annotation track||http://edamontology.org/data_3002
877||2122||RGD ID||http://edamontology.org/data_2620
876||2407||Loading||http://edamontology.org/operation_1812
878||206||TAIR accession (protein)||http://edamontology.org/data_2621
879||3942||Structure retrieval||http://edamontology.org/operation_1814
880||3942||Sequence retrieval||http://edamontology.org/operation_1813
881||140||Sequence assembly ID||http://edamontology.org/data_3266
882||2074||LIPID MAPS ID||http://edamontology.org/data_2625
883||2384||HGMD ID||http://edamontology.org/data_3265
885||2384||COSMIC ID||http://edamontology.org/data_3264
884||3729||Compound ID (HMDB)||http://edamontology.org/data_2622
887||981||Enzyme ID (MEROPS)||http://edamontology.org/data_2629
886||2566||Protein residue surface calculation (accessible)||http://edamontology.org/operation_1819
888||35||BioGRID interaction ID||http://edamontology.org/data_2628
889||3942||Molecular interaction ID||http://edamontology.org/data_2627
890||2075||PeptideAtlas ID||http://edamontology.org/data_2626
891||213||Surface rendering||http://edamontology.org/operation_1816
892||2564||Protein atom surface calculation (accessible)||http://edamontology.org/operation_1817
893||2564||Protein atom surface calculation (accessible molecular)||http://edamontology.org/operation_1818
894||71||Cell type ontology ID||http://edamontology.org/data_3238
895||944||Pathway ID (PharmGKB)||http://edamontology.org/data_2650
896||3876||Cytoband position||http://edamontology.org/data_3236
897||3942||GWAS report||http://edamontology.org/data_3231
899||1605||Cell type identifier||http://edamontology.org/data_2655
898||2566||Protein residue surface calculation (accessible molecular)||http://edamontology.org/operation_1821
901||2566||Protein residue surface calculation (vacuum accessible)||http://edamontology.org/operation_1820
900||3730||NeuronDB ID||http://edamontology.org/data_2656
902||3730||NeuroMorpho ID||http://edamontology.org/data_2657
903||3729||Compound ID (ChemIDplus)||http://edamontology.org/data_2658
905||709||Disease ID (PharmGKB)||http://edamontology.org/data_2651
904||2683||Backbone torsion angle calculation||http://edamontology.org/operation_1825
906||944||Drug ID (PharmGKB)||http://edamontology.org/data_2652
907||2567||Protein surface calculation (accessible)||http://edamontology.org/operation_1824
908||2567||Protein surface calculation (accessible molecular)||http://edamontology.org/operation_1823
909||3728||Drug ID (TTD)||http://edamontology.org/data_2653
910||2072||Target ID (TTD)||http://edamontology.org/data_2654
911||2566||Protein residue surface calculation (vacuum molecular)||http://edamontology.org/operation_1822
912||2683||Tau angle calculation||http://edamontology.org/operation_1828
913||3473||Cysteine bridge detection||http://edamontology.org/operation_1829
914||2683||Full torsion angle calculation||http://edamontology.org/operation_1826
915||2683||Cysteine torsion angle calculation||http://edamontology.org/operation_1827
916||1006||Pathway ID (SMPDB)||http://edamontology.org/data_2659
917||1605||NCBI genetic code ID||http://edamontology.org/data_3022
918||206||UniProt accession||http://edamontology.org/data_3021
919||1513||NMR||http://edamontology.org/topic_0593
921||3473||Free cysteine detection||http://edamontology.org/operation_1830
920||3729||Compound ID (ChEMBL)||http://edamontology.org/data_2646
922||2072||LGICdb identifier||http://edamontology.org/data_2647
923||2331||Sequence classification||http://edamontology.org/topic_0594
924||1192||Residue contact calculation (residue-nucleic acid)||http://edamontology.org/operation_1832
926||2131||Reaction ID (Rhea)||http://edamontology.org/data_2644
925||3942||Protein classification||http://edamontology.org/topic_0595
928||1006||Pathway ID (Unipathway)||http://edamontology.org/data_2645
930||1669||Kinetic model||http://edamontology.org/data_3241
927||2072||Protein ID (EMBL/GenBank/DDBJ)||http://edamontology.org/data_3029
929||3473||Metal-bound cysteine detection||http://edamontology.org/operation_1831
932||1192||Residue contact calculation (residue-metal)||http://edamontology.org/operation_1834
933||1964||Taxonomy||http://edamontology.org/data_3028
931||2386||Gene ID (miRBase)||http://edamontology.org/data_2642
935||2386||Gene ID (ZFIN)||http://edamontology.org/data_2643
934||3942||GO concept name (molecular function)||http://edamontology.org/data_3027
936||3942||GO concept name (biological process)||http://edamontology.org/data_3026
937||3348||Residue bump detection||http://edamontology.org/operation_1836
940||1192||Residue contact calculation (residue-negative ion)||http://edamontology.org/operation_1835
939||1605||Ontology concept identifier||http://edamontology.org/data_3025
938||2131||Reaction ID (MACie)||http://edamontology.org/data_2641
941||2618||Residue symmetry contact calculation||http://edamontology.org/operation_1837
942||1192||Residue contact calculation (residue-ligand)||http://edamontology.org/operation_1838
943||2618||Salt bridge calculation||http://edamontology.org/operation_1839
944||2122||PharmGKB ID||http://edamontology.org/data_2649
945||998||Reaction kinetics ID (SABIO-RK)||http://edamontology.org/data_2648
946||1605||Matrix identifier||http://edamontology.org/data_3036
947||3942||Core data||http://edamontology.org/data_3031
948||1605||Sequence feature identifier||http://edamontology.org/data_3034
949||1605||Structure identifier||http://edamontology.org/data_3035
951||649||Sequence cluster ID (CluSTr)||http://edamontology.org/data_2612
950||2122||MGI accession||http://edamontology.org/data_3274
953||709||ICD identifier||http://edamontology.org/data_2611
952||1605||Phenotype name||http://edamontology.org/data_3275
954||2108||TCDB ID||http://edamontology.org/data_2614
955||713||KEGG Glycan ID||http://edamontology.org/data_2613
956||126||Ensembl gene tree ID||http://edamontology.org/data_3270
957||2684||Gene tree||http://edamontology.org/data_3271
958||2122||Ensembl ID||http://edamontology.org/data_2610
959||2684||Species tree||http://edamontology.org/data_3272
960||1605||Sample ID||http://edamontology.org/data_3273
961||965||RESID ID||http://edamontology.org/data_2619
962||35||MINT ID||http://edamontology.org/data_2615
963||35||DIP ID||http://edamontology.org/data_2616
964||2072||Signaling Gateway protein ID||http://edamontology.org/data_2617
965||1605||Protein modification ID||http://edamontology.org/data_2618
966||1964||Gene expression data||http://edamontology.org/data_2603
967||3942||Genotype and phenotype data||http://edamontology.org/data_2602
968||3942||Small molecule data||http://edamontology.org/data_2601
969||1964||Pathway or network||http://edamontology.org/data_2600
970||838||logicFS||http://www.ebi.ac.uk/efo/swo/SWO_0000599
971||4017||Linear modelling||http://www.ebi.ac.uk/efo/swo/SWO_0000595
972||176||lma||http://www.ebi.ac.uk/efo/swo/SWO_0000596
973||4017||Local-pooled-error||http://www.ebi.ac.uk/efo/swo/SWO_0000597
974||4039||log file||http://www.ebi.ac.uk/efo/swo/SWO_0000598
975||713||Reaction ID (KEGG)||http://edamontology.org/data_2608
976||713||Drug ID (KEGG)||http://edamontology.org/data_2609
977||1058||RFAM name||http://edamontology.org/data_2606
978||713||Compound ID (KEGG)||http://edamontology.org/data_2605
979||2765||Introns||http://edamontology.org/topic_2754
980||1000||Cell line name (assonant)||http://edamontology.org/data_2320
981||296||Enzyme ID||http://edamontology.org/data_2321
982||3728||DrugBank ID||http://edamontology.org/data_2326
983||981||REBASE enzyme number||http://edamontology.org/data_2325
984||1002||GI number (protein)||http://edamontology.org/data_2327
985||2657||GenePix Pro 4.0||http://www.ebi.ac.uk/efo/swo/SWO_0000199
986||2146||Bit score||http://edamontology.org/data_2335
987||939||Ontology concept name||http://edamontology.org/data_2339
988||1605||Ontology identifier||http://edamontology.org/data_2338
989||1964||Resource metadata||http://edamontology.org/data_2337
990||392||Translation phase specification||http://edamontology.org/data_2336
991||3942||Gene name (NCBI)||http://edamontology.org/data_2300
992||35||STRING ID||http://edamontology.org/data_2302
993||2839||SMILES string||http://edamontology.org/data_2301
994||2304||Protein families||http://edamontology.org/topic_0724
995||3942||Nucleic acid classification||http://edamontology.org/topic_0722
996||3942||Virus annotation||http://edamontology.org/data_2307
997||3942||Virus annotation (taxonomy)||http://edamontology.org/data_2308
998||2131||Reaction ID (SABIO-RK)||http://edamontology.org/data_2309
999||1000||Cell line name (exact)||http://edamontology.org/data_2317
1000||292||Cell line name||http://edamontology.org/data_2316
1001||1012||NCBI version||http://edamontology.org/data_2315
1002||1012||GI number||http://edamontology.org/data_2314
1003||3762||Carbohydrate report||http://edamontology.org/data_2313
1004||1000||Cell line name (truncated)||http://edamontology.org/data_2318
1005||1000||Cell line name (no punctuation)||http://edamontology.org/data_2319
1006||59||Pathway or network accession||http://edamontology.org/data_2365
1007||633||Secondary structure alignment||http://edamontology.org/data_2366
1008||209||ASTD ID||http://edamontology.org/data_2367
1009||1008||ASTD ID (exon)||http://edamontology.org/data_2368
1010||1008||ASTD ID (intron)||http://edamontology.org/data_2369
1011||3942||Domain-domain interaction (indirect)||http://edamontology.org/data_2360
1012||216||Sequence accession (hybrid)||http://edamontology.org/data_2362
1013||3942||2D PAGE data||http://edamontology.org/data_2363
1014||3942||2D PAGE report||http://edamontology.org/data_2364
1016||177||Dot-bracket format||http://edamontology.org/format_1457
1015||783||Transcription factors and regulatory sites||http://edamontology.org/topic_0749
1018||3942||Protein sites and features||http://edamontology.org/topic_0748
1017||1016||Vienna local RNA secondary structure format||http://edamontology.org/format_1458
1019||3942||Protein sequence alignment||http://edamontology.org/topic_0741
1020||3942||Nucleic acid sequence alignment||http://edamontology.org/topic_0740
1021||3942||Nucleic acid sites and features||http://edamontology.org/topic_0747
1022||3942||Protein-motif interaction||http://edamontology.org/data_2378
1023||7||Strain identifier||http://edamontology.org/data_2379
1024||1008||ASTD ID (polya)||http://edamontology.org/data_2370
1025||1008||ASTD ID (tss)||http://edamontology.org/data_2371
1026||1030||Spot serial number||http://edamontology.org/data_2374
1027||177||dssp||http://edamontology.org/format_1454
1028||1030||Spot ID (HSC-2DPAGE)||http://edamontology.org/data_2375
1029||3942||2D PAGE spot report||http://edamontology.org/data_2372
1031||177||hssp||http://edamontology.org/format_1455
1030||1605||Spot ID||http://edamontology.org/data_2373
1032||1409||Protein domains and folds||http://edamontology.org/topic_0736
1034||3942||Theoretical biology||http://edamontology.org/topic_0771
1033||1043||Sequence cluster ID (UniRef100)||http://edamontology.org/data_2347
1035||1043||Sequence cluster ID (UniRef90)||http://edamontology.org/data_2348
1036||1043||Sequence cluster ID (UniRef50)||http://edamontology.org/data_2349
1037||3942||Data types and objects||http://edamontology.org/topic_0770
1038||713||Pathway ID (KEGG)||http://edamontology.org/data_2343
1039||1006||Pathway ID (NCI-Nature)||http://edamontology.org/data_2344
1041||1006||Pathway ID (ConsensusPathDB)||http://edamontology.org/data_2345
1040||3942||Sequence features (repeats)||http://edamontology.org/data_1299
1043||649||Sequence cluster ID (UniRef)||http://edamontology.org/data_2346
1042||3942||Sequence motif matches||http://edamontology.org/data_1298
1044||3192||Genome build identifier||http://edamontology.org/data_2340
1046||3942||GlobPlot domain image||http://edamontology.org/data_1294
1045||59||Pathway or network name||http://edamontology.org/data_2342
1047||3942||SMART protein schematic||http://edamontology.org/data_1293
1048||3942||InterPro architecture image||http://edamontology.org/data_1292
1049||3942||InterPro detailed match image||http://edamontology.org/data_1291
1050||3942||InterPro compact match image||http://edamontology.org/data_1290
1051||3942||Workflows||http://edamontology.org/topic_0769
1052||3942||Protein and peptide identification||http://edamontology.org/topic_0767
1053||3942||Domain-nucleic acid interaction report||http://edamontology.org/data_2358
1054||3942||Domain-domain interactions||http://edamontology.org/data_2359
1055||1058||RFAM accession||http://edamontology.org/data_2356
1056||3942||Protein signature type||http://edamontology.org/data_2357
1057||422||RNA family report||http://edamontology.org/data_2354
1058||1605||RNA family identifier||http://edamontology.org/data_2355
1059||177||PDB||http://edamontology.org/format_1476
1060||1964||Ontology data||http://edamontology.org/data_2353
1061||2910||PDB database entry format||http://edamontology.org/format_1475
1062||181||PDBML||http://edamontology.org/format_1478
1063||177||mmCIF||http://edamontology.org/format_1477
1064||3942||Phosphorylation sites||http://edamontology.org/topic_0751
1065||568||Signaling pathways||http://edamontology.org/topic_0754
1066||568||Metabolic pathways||http://edamontology.org/topic_0753
1067||742||CRG MCoffee Web Tool||http://www.ebi.ac.uk/swo/SWO_0000069
1068||742||CRG TCoffee Web Tool||http://www.ebi.ac.uk/swo/SWO_0000068
1069||742||CRG RCoffee Web Tool||http://www.ebi.ac.uk/swo/SWO_0000067
1070||742||EBI TCoffee Web Tool||http://www.ebi.ac.uk/swo/SWO_0000066
1071||177||Sequence-MEME profile alignment||http://edamontology.org/format_1419
1072||1136||Feature table||http://edamontology.org/data_1270
1073||177||HMMER profile alignment (sequences versus HMMs)||http://edamontology.org/format_1421
1074||177||HMMER profile alignment (HMM versus sequences)||http://edamontology.org/format_1422
1075||1964||Map||http://edamontology.org/data_1274
1076||177||Phylip distance matrix||http://edamontology.org/format_1423
1077||1325||data selection algorithm||http://kt.ijs.si/panovp/OntoDM#OntoDM-KDD_573276
1079||1136||Nucleic acid features||http://edamontology.org/data_1276
1078||838||SPSS||http://www.ebi.ac.uk/swo/SWO_0000075
1081||1136||Protein features||http://edamontology.org/data_1277
1080||1078||SPSS 20.0||http://www.ebi.ac.uk/swo/SWO_0000076
1082||1075||Genetic map||http://edamontology.org/data_1278
1083||838||Q||http://www.ebi.ac.uk/swo/SWO_0000073
1085||1093||Sequence map||http://edamontology.org/data_1279
1084||1083||Q 4.2||http://www.ebi.ac.uk/swo/SWO_0000074
1086||742||CRG PSICoffee Web Tool||http://www.ebi.ac.uk/swo/SWO_0000071
1087||741||CRG TCoffee 9.02.r1228||http://www.ebi.ac.uk/swo/SWO_0000072
1088||742||CRG Expresso Web Tool||http://www.ebi.ac.uk/swo/SWO_0000070
1089||1090||SAM 3.5||http://www.ebi.ac.uk/swo/SWO_0000078
1090||838||Sequence Alignment and Modeling System||http://www.ebi.ac.uk/swo/SWO_0000077
1091||838||Cytoscape||http://www.ebi.ac.uk/swo/SWO_0000079
1092||3942||Sequence signature map||http://edamontology.org/data_1281
1094||3942||Molecular interaction data processing||http://edamontology.org/operation_2993
1093||1075||Physical map||http://edamontology.org/data_1280
1095||1085||Gene map||http://edamontology.org/data_1285
1097||1085||Plasmid map||http://edamontology.org/data_1286
1096||2729||Nucleic acid density plotting||http://edamontology.org/operation_2284
1099||1206||Classification||http://edamontology.org/operation_2990
1098||1093||Cytogenetic map||http://edamontology.org/data_1283
1100||1082||DNA transduction map||http://edamontology.org/data_1284
1101||1085||Restriction map||http://edamontology.org/data_1289
1102||1085||Genome map||http://edamontology.org/data_1288
1103||1099||Structure classification||http://edamontology.org/operation_2996
1104||1091||Cytoscape 2.8||http://www.ebi.ac.uk/swo/SWO_0000080
1105||1099||Sequence classification||http://edamontology.org/operation_2995
1106||2453||Nucleic acid comparison||http://edamontology.org/operation_2998
1108||2453||Protein comparison||http://edamontology.org/operation_2997
1107||3605||Plugin||http://www.ebi.ac.uk/swo/SWO_0000083
1109||177||TreeBASE format||http://edamontology.org/format_1436
1110||3740||Ontology mapping||http://edamontology.org/data_3509
1111||177||Phylip tree format||http://edamontology.org/format_1435
1112||177||TreeFam format||http://edamontology.org/format_1437
1113||3942||Word size||http://edamontology.org/data_1250
1114||3160||EPD ID||http://edamontology.org/data_2386
1115||3942||Window size||http://edamontology.org/data_1251
1116||202||RefSeq accession (protein)||http://edamontology.org/data_2385
1117||418||Bibliography||http://edamontology.org/data_3505
1118||206||IPI protein ID||http://edamontology.org/data_2384
1119||3942||Sequence length range||http://edamontology.org/data_1252
1121||3942||Sequence information report||http://edamontology.org/data_1253
1120||1123||EGA accession||http://edamontology.org/data_2383
1122||177||Phylip tree distance format||http://edamontology.org/format_1445
1123||1605||Genotype experiment ID||http://edamontology.org/data_2382
1125||3942||Experiment report (genotyping)||http://edamontology.org/data_2381
1124||838||Gene Expression Atlas at EBI R statistics package||http://www.ebi.ac.uk/swo/SWO_0000090
1126||2122||CABRI accession||http://edamontology.org/data_2380
1127||3942||Sequence property (nucleic acid)||http://edamontology.org/data_1258
1128||1965||AppleScript||http://www.ebi.ac.uk/swo/SWO_0000093
1129||1134||Sequence complexity report||http://edamontology.org/data_1259
1130||1965||Assembly||http://www.ebi.ac.uk/swo/SWO_0000094
1131||1965||ActionScript||http://www.ebi.ac.uk/swo/SWO_0000091
1132||1965||Ada||http://www.ebi.ac.uk/swo/SWO_0000092
1133||1965||C ||http://www.ebi.ac.uk/swo/SWO_0000097
1134||2018||Sequence property||http://edamontology.org/data_1254
1135||209||UniSTS accession||http://edamontology.org/data_2389
1136||1964||Sequence features||http://edamontology.org/data_1255
1137||1965||COBOL||http://www.ebi.ac.uk/swo/SWO_0000098
1138||3942||Sequence features (comparative)||http://edamontology.org/data_1256
1140||276||TAIR accession (At gene)||http://edamontology.org/data_2388
1139||1965||C_1139||http://www.ebi.ac.uk/swo/SWO_0000095
1141||1965||C Sharp||http://www.ebi.ac.uk/swo/SWO_0000096
1142||2122||TAIR accession||http://edamontology.org/data_2387
1143||3942||Sequence property (protein)||http://edamontology.org/data_1257
1144||1965||ColdFusion||http://www.ebi.ac.uk/swo/SWO_0000099
1145||3148||single generalization algorithm||http://kt.ijs.si/panovp/OntoDM#OntoDM_731692
1146||177||Phylip tree raw||http://edamontology.org/format_1425
1147||177||ClustalW dendrogram||http://edamontology.org/format_1424
1150||3942||Fungi annotation||http://edamontology.org/data_2395
1149||1154||Base position variability plot||http://edamontology.org/data_1263
1148||177||Phylip discrete states format||http://edamontology.org/format_1433
1152||3942||Sequence composition table||http://edamontology.org/data_1264
1151||177||Phylip cliques format||http://edamontology.org/format_1434
1153||3942||Gene features report (exon)||http://edamontology.org/data_2397
1155||3942||Phylogenetic property values format||http://edamontology.org/format_1431
1154||1134||Sequence composition report||http://edamontology.org/data_1261
1156||3942||Fungi annotation (anamorph)||http://edamontology.org/data_2396
1159||3942||Data retrieval (pathway or network)||http://edamontology.org/operation_2264
1158||1175||Peptide molecular weight hits||http://edamontology.org/data_1262
1157||177||Phylip character frequencies format||http://edamontology.org/format_1432
1161||3942||Data retrieval (identifier)||http://edamontology.org/operation_2265
1160||209||UTR accession||http://edamontology.org/data_2391
1162||1134||Sequence ambiguity report||http://edamontology.org/data_1260
1163||177||Phylip continuous quantitative characters||http://edamontology.org/format_1430
1164||209||UNITE accession||http://edamontology.org/data_2390
1165||2386||mFLJ/mKIAA number||http://edamontology.org/data_2393
1166||206||UniParc accession||http://edamontology.org/data_2392
1167||3942||DAS sequence feature annotation||http://edamontology.org/data_1269
1169||3942||Gene transcriptional features report||http://edamontology.org/data_2399
1168||1154||Amino acid frequencies table||http://edamontology.org/data_1267
1170||839||data visualization task||http://kt.ijs.si/panovp/OntoDM#OntoDM_953101
1171||1154||Amino acid word frequencies table||http://edamontology.org/data_1268
1172||958||Ensembl protein ID||http://edamontology.org/data_2398
1173||1154||Base frequencies table||http://edamontology.org/data_1265
1174||1154||Base word frequencies table||http://edamontology.org/data_1266
1175||2776||Sequence set (protein)||http://edamontology.org/data_1233
1176||2776||Sequence cluster||http://edamontology.org/data_1235
1177||2776||Sequence set (nucleic acid)||http://edamontology.org/data_1234
1179||3942||HMMER synthetic sequences set||http://edamontology.org/data_1237
1178||2865||Codon usage fraction calculation||http://edamontology.org/operation_2964
1180||3942||Psiblast checkpoint file||http://edamontology.org/data_1236
1181||1177||Restriction digest||http://edamontology.org/data_1239
1182||2865||Codon usage bias calculation||http://edamontology.org/operation_2962
1183||1182||Codon usage bias plotting||http://edamontology.org/operation_2963
1184||1175||Proteolytic digest||http://edamontology.org/data_1238
1185||1176||Sequence cluster (nucleic acid)||http://edamontology.org/data_1246
1186||1175||Sequence cluster (protein)||http://edamontology.org/data_1245
1187||3942||primersearch primer pairs sequence record||http://edamontology.org/data_1244
1188||3942||Primer3 mispriming library file||http://edamontology.org/data_1243
1189||3942||Alignment processing||http://edamontology.org/operation_2951
1190||3942||Structure alignment processing||http://edamontology.org/operation_2952
1191||392||Sequence length||http://edamontology.org/data_1249
1192||2677||Residue contact calculation||http://edamontology.org/operation_2950
1193||3942||Primer3 internal oligo mishybridizing library||http://edamontology.org/data_1242
1194||3942||vectorstrip cloning vector definition file||http://edamontology.org/data_1241
1195||1177||PCR primers||http://edamontology.org/data_1240
1196||527||Prokaryotes and archae||http://edamontology.org/topic_1811
1197||3173||Protein interaction analysis||http://edamontology.org/operation_2949
1198||3942||Molecular interaction analysis||http://edamontology.org/operation_2948
1199||210||Microarray tree-map rendering||http://edamontology.org/operation_2942
1200||210||Microarray Box-Whisker plot plotting||http://edamontology.org/operation_2943
1201||210||Microarray scatter plot plotting||http://edamontology.org/operation_2940
1202||210||Whole microarray graph plotting||http://edamontology.org/operation_2941
1203||3942||Alignment analysis||http://edamontology.org/operation_2946
1204||3567||Article analysis||http://edamontology.org/operation_2947
1205||3150||Physical mapping||http://edamontology.org/operation_2944
1206||839||Analysis||http://edamontology.org/operation_2945
1207||210||Microarray tree or dendrogram rendering||http://edamontology.org/operation_2938
1208||210||Microarray proximity map plotting||http://edamontology.org/operation_2937
1209||210||Microarray principal component plotting||http://edamontology.org/operation_2939
1210||1108||Protein property comparison||http://edamontology.org/operation_2930
1211||2453||Secondary structure comparison||http://edamontology.org/operation_2931
1212||2823||Hopp and Woods plotting||http://edamontology.org/operation_2932
1213||210||Microarray cluster textual view generation||http://edamontology.org/operation_2934
1214||210||Microarray wave graph plotting||http://edamontology.org/operation_2935
1215||210||Microarray dendrograph plotting||http://edamontology.org/operation_2936
1216||2359||Distribution clause||http://www.ebi.ac.uk/swo/license/SWO_10000035
1218||1443||Protein feature detection||http://edamontology.org/operation_3092
1217||2840||QSAR descriptor (geometrical)||http://edamontology.org/data_1203
1219||2840||QSAR descriptor (topological)||http://edamontology.org/data_1204
1220||3942||Protein feature prediction (from structure)||http://edamontology.org/operation_3090
1221||2840||QSAR descriptor (molecular)||http://edamontology.org/data_1205
1222||2407||Editing||http://edamontology.org/operation_3096
1223||1965||Ruby||http://www.ebi.ac.uk/swo/SWO_0000120
1224||2473||Nucleic acid design||http://edamontology.org/operation_3095
1225||2840||QSAR descriptor (constitutional)||http://edamontology.org/data_1201
1226||3295||Protein interaction network prediction||http://edamontology.org/operation_3094
1228||3942||Database search (by sequence)||http://edamontology.org/operation_3093
1227||2840||QSAR descriptor (electronic)||http://edamontology.org/data_1202
1230||1965||Mathematica||http://www.ebi.ac.uk/swo/SWO_0000113
1229||2597||Protein property calculation (from sequence)||http://edamontology.org/operation_3088
1231||1965||Maple||http://www.ebi.ac.uk/swo/SWO_0000112
1233||3942||obsolete_ontology||http://www.ebi.ac.uk/swo/ontology
1232||1965||Lua||http://www.ebi.ac.uk/swo/SWO_0000111
1234||1218||Protein sequence feature detection||http://edamontology.org/operation_3087
1235||1965||Lisp||http://www.ebi.ac.uk/swo/SWO_0000110
1236||1965||Prolog||http://www.ebi.ac.uk/swo/SWO_0000117
1237||1965||PHP||http://www.ebi.ac.uk/swo/SWO_0000116
1238||1965||Perl||http://www.ebi.ac.uk/swo/SWO_0000115
1239||1965||Pascal||http://www.ebi.ac.uk/swo/SWO_0000114
1240||1965||REXX||http://www.ebi.ac.uk/swo/SWO_0000119
1241||1965||Python||http://www.ebi.ac.uk/swo/SWO_0000118
1242||1965||D||http://www.ebi.ac.uk/swo/SWO_0000100
1243||1965||Dylan||http://www.ebi.ac.uk/swo/SWO_0000102
1244||1965||Delphi||http://www.ebi.ac.uk/swo/SWO_0000101
1245||1965||Forth||http://www.ebi.ac.uk/swo/SWO_0000104
1246||1965||Eiffel||http://www.ebi.ac.uk/swo/SWO_0000103
1247||1965||Groovy||http://www.ebi.ac.uk/swo/SWO_0000106
1248||1965||Fortran||http://www.ebi.ac.uk/swo/SWO_0000105
1249||1965||JavaScript||http://www.ebi.ac.uk/swo/SWO_0000108
1250||1513||MRI||http://edamontology.org/topic_3444
1251||1965||Haskell||http://www.ebi.ac.uk/swo/SWO_0000107
1252||1965||LabVIEW||http://www.ebi.ac.uk/swo/SWO_0000109
1253||1763||Anaesthesiology||http://edamontology.org/topic_3402
1254||1763||Critical care medicine||http://edamontology.org/topic_3403
1255||1763||Dermatology||http://edamontology.org/topic_3404
1256||1763||Dentistry||http://edamontology.org/topic_3405
1257||1763||Ear, nose and throat medicine||http://edamontology.org/topic_3406
1258||1763||Endocrinology and metabolism||http://edamontology.org/topic_3407
1259||1763||Haematology||http://edamontology.org/topic_3408
1260||1763||Gastroenterology||http://edamontology.org/topic_3409
1261||838||Weka||http://www.ebi.ac.uk/swo/SWO_0000141
1262||838||PostgreSQL||http://www.ebi.ac.uk/swo/SWO_0000142
1263||838||search engine||http://www.ebi.ac.uk/swo/SWO_0000140
1264||3098||web content search||http://www.ebi.ac.uk/swo/SWO_0000139
1265||838||Entrez||http://www.ebi.ac.uk/swo/SWO_0000138
1266||838||NONMEM||http://www.ebi.ac.uk/swo/SWO_0000137
1267||1965||NMTRAN||http://www.ebi.ac.uk/swo/SWO_0000136
1268||2194||PSI-BLAST||http://www.ebi.ac.uk/swo/SWO_0000135
1269||1965||MLXTRAN||http://www.ebi.ac.uk/swo/SWO_0000134
1270||838||DAVID||http://www.ebi.ac.uk/swo/SWO_0000133
1271||1763||Gender medicine||http://edamontology.org/topic_3410
1272||1763||Hepatic and biliary medicine||http://edamontology.org/topic_3412
1273||1763||Gynaecology and obstetrics||http://edamontology.org/topic_3411
1274||1763||Medical toxicology||http://edamontology.org/topic_3415
1275||1763||Musculoskeletal medicine||http://edamontology.org/topic_3416
1276||1781||Infectious tropical disease||http://edamontology.org/topic_3413
1277||1763||Trauma medicine||http://edamontology.org/topic_3414
1278||1763||Psychiatry||http://edamontology.org/topic_3419
1279||1763||Opthalmology||http://edamontology.org/topic_3417
1280||1763||Paediatrics||http://edamontology.org/topic_3418
1281||2480||Pathway or network visualisation||http://edamontology.org/operation_3083
1282||1965||Visual Basic||http://www.ebi.ac.uk/swo/SWO_0000130
1283||3942||Protein function prediction (from sequence)||http://edamontology.org/operation_3084
1284||1222||Sequence alignment editing||http://edamontology.org/operation_3081
1285||1222||Structure editing||http://edamontology.org/operation_3080
1286||1965||SQL||http://www.ebi.ac.uk/swo/SWO_0000126
1287||1965||Smalltalk||http://www.ebi.ac.uk/swo/SWO_0000125
1288||1965||Verilog||http://www.ebi.ac.uk/swo/SWO_0000128
1289||1965||Turing||http://www.ebi.ac.uk/swo/SWO_0000127
1290||1965||Scala||http://www.ebi.ac.uk/swo/SWO_0000122
1291||1965||SAS||http://www.ebi.ac.uk/swo/SWO_0000121
1292||1965||Shell||http://www.ebi.ac.uk/swo/SWO_0000124
1293||1965||Scheme||http://www.ebi.ac.uk/swo/SWO_0000123
1294||1216||Distribution restricted||http://www.ebi.ac.uk/swo/license/SWO_10000036
1295||1216||Distribution unrestricted||http://www.ebi.ac.uk/swo/license/SWO_10000037
1296||2361||derivative software allowed||http://www.ebi.ac.uk/swo/license/SWO_10000038
1297||1763||Complementary medicine||http://edamontology.org/topic_3423
1299||1763||Urology and nephrology||http://edamontology.org/topic_3422
1298||1965||VHDL||http://www.ebi.ac.uk/swo/SWO_0000129
1300||1763||Surgery||http://edamontology.org/topic_3421
1301||1763||Reproductive health||http://edamontology.org/topic_3420
1302||194||Transmembrane protein visualisation||http://edamontology.org/operation_2241
1303||3942||Demonstration||http://edamontology.org/operation_2246
1304||838||GeneticsPed||http://www.ebi.ac.uk/efo/swo/SWO_0000203
1305||838||GlobalAncova||http://www.ebi.ac.uk/efo/swo/SWO_0000206
1306||838||GenomeGraphs||http://www.ebi.ac.uk/efo/swo/SWO_0000205
1307||2657||GenePix Pro 3.0||http://www.ebi.ac.uk/efo/swo/SWO_0000200
1309||838||GeneticsDesign||http://www.ebi.ac.uk/efo/swo/SWO_0000202
1308||1778||Data mining||http://edamontology.org/topic_3473
1310||838||GeneticsBase||http://www.ebi.ac.uk/efo/swo/SWO_0000201
1311||1778||Machine learning||http://edamontology.org/topic_3474
1312||838||GraphAT||http://www.ebi.ac.uk/efo/swo/SWO_0000208
1313||838||GOSemSim||http://www.ebi.ac.uk/efo/swo/SWO_0000207
1314||838||GraphAlignment||http://www.ebi.ac.uk/efo/swo/SWO_0000209
1315||3942||Data retrieval (sequence profile)||http://edamontology.org/operation_2237
1316||1229||3D-1D scoring matrix generation||http://edamontology.org/operation_2239
1317||3294||Statistical calculation||http://edamontology.org/operation_2238
1318||2544||Representative sequence identification||http://edamontology.org/operation_2233
1319||3942||Structure file processing||http://edamontology.org/operation_2234
1320||2990||Biological databases||http://edamontology.org/topic_3489
1321||839||data storage||http://www.ebi.ac.uk/swo/SWO_0000143
1322||838||Segway 1.2||http://www.ebi.ac.uk/swo/SWO_0000145
1323||1241||Python 2.6||http://www.ebi.ac.uk/swo/SWO_0000146
1324||1241||Python 2.7||http://www.ebi.ac.uk/swo/SWO_0000147
1325||4017||data processing algorithm||http://kt.ijs.si/panovp/OntoDM#OntoDM_361570
1326||2336||Structure comparison||http://edamontology.org/topic_1770
1327||3942||Data retrieval (ontology concept)||http://edamontology.org/operation_2224
1328||3942||Data retrieval (ontology annotation)||http://edamontology.org/operation_2222
1329||1513||Neutron diffraction||http://edamontology.org/topic_3448
1330||838||IRanges||http://www.ebi.ac.uk/efo/swo/SWO_0000230
1331||838||ITALICS||http://www.ebi.ac.uk/efo/swo/SWO_0000231
1332||838||Harshlight||http://www.ebi.ac.uk/efo/swo/SWO_0000222
1333||4017||Hardy-Weinberg equilibrium||http://www.ebi.ac.uk/efo/swo/SWO_0000221
1334||838||Heatplus||http://www.ebi.ac.uk/efo/swo/SWO_0000224
1335||1513||Tomography||http://edamontology.org/topic_3452
1336||838||HilbertVisGUI||http://www.ebi.ac.uk/efo/swo/SWO_0000226
1337||838||HilbertVis||http://www.ebi.ac.uk/efo/swo/SWO_0000225
1338||838||ICS-501 (version 2.3) Image Capture System||http://www.ebi.ac.uk/efo/swo/SWO_0000228
1339||4017||Hypergeometric probability||http://www.ebi.ac.uk/efo/swo/SWO_0000227
1340||4017||Iteratively ReWeighted Least Squares||http://www.ebi.ac.uk/efo/swo/SWO_0000229
1341||4017||HaarSeg algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000220
1342||838||HELP||http://www.ebi.ac.uk/efo/swo/SWO_0000213
1343||4017||Hexagon binning algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000212
1344||838||GridGrinder||http://www.ebi.ac.uk/efo/swo/SWO_0000210
1345||4017||Hidden Markov Model||http://www.ebi.ac.uk/efo/swo/SWO_0000217
1346||4017||Hubert s gamma||http://www.ebi.ac.uk/efo/swo/SWO_0000216
1347||4017||Heterogeneous Error Model (HEM)||http://www.ebi.ac.uk/efo/swo/SWO_0000215
1348||838||HEM||http://www.ebi.ac.uk/efo/swo/SWO_0000214
1349||1761||Function analysis||http://edamontology.org/topic_1775
1350||4017||Hidden Variable Dynamic Modelling HVDM)||http://www.ebi.ac.uk/efo/swo/SWO_0000219
1351||4017||Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH) algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000218
1352||2319||Functional, regulatory and non-coding RNA||http://edamontology.org/topic_0659
1353||2305||DNA||http://edamontology.org/topic_0654
1354||2765||Coding RNA||http://edamontology.org/topic_0655
1355||181||KGML||http://www.ebi.ac.uk/efo/swo/SWO_0000249
1356||838||KEGGSOAP||http://www.ebi.ac.uk/efo/swo/SWO_0000247
1357||838||KEGGgraph||http://www.ebi.ac.uk/efo/swo/SWO_0000248
1358||838||Jaguar||http://www.ebi.ac.uk/efo/swo/SWO_0000245
1359||838||KCsmart||http://www.ebi.ac.uk/efo/swo/SWO_0000246
1360||4017||Jaccard s index||http://www.ebi.ac.uk/efo/swo/SWO_0000243
1361||1964||LC-MS data||http://www.ebi.ac.uk/efo/swo/SWO_0000253
1362||838||LBE||http://www.ebi.ac.uk/efo/swo/SWO_0000252
1363||4017||Kolmogorov Smirnov rank-sum based algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000251
1365||4017|| KLD ||http://www.ebi.ac.uk/efo/swo/SWO_0000250
1364||3942||Gene cluster format||http://edamontology.org/format_2175
1366||137||Sequence cluster format||http://edamontology.org/format_2170
1367||3942||Study topic||http://edamontology.org/topic_2809
1368||3942||rRNA||http://edamontology.org/topic_0660
1369||1366||Sequence cluster format (nucleic acid)||http://edamontology.org/format_2172
1370||3942||Tool topic||http://edamontology.org/topic_2807
1371||1366||Sequence cluster format (protein)||http://edamontology.org/format_2171
1372||3942||tRNA||http://edamontology.org/topic_0663
1373||838||ImageQuant||http://www.ebi.ac.uk/efo/swo/SWO_0000236
1374||838||ImageReader||http://www.ebi.ac.uk/efo/swo/SWO_0000237
1375||838||ImaGene||http://www.ebi.ac.uk/efo/swo/SWO_0000238
1376||1375||Imagene v4.0||http://www.ebi.ac.uk/efo/swo/SWO_0000239
1377||1964||ILLUMINA data||http://www.ebi.ac.uk/efo/swo/SWO_0000233
1378||1375||ImaGene4.1 software||http://www.ebi.ac.uk/efo/swo/SWO_0000234
1379||1375||ImaGene 3.0||http://www.ebi.ac.uk/efo/swo/SWO_0000235
1380||838||Initial microarray data processing (data filtering, local normalisation and quality control)||http://www.ebi.ac.uk/efo/swo/SWO_0000241
1381||4017||Median Average Difference Algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000267
1382||3942||obsolete_MAGE-ML||http://www.ebi.ac.uk/efo/swo/SWO_0000268
1383||4017||Logic regression||http://www.ebi.ac.uk/efo/swo/SWO_0000265
1384||838||MAANOVA v1.2 package for MATLAB||http://www.ebi.ac.uk/efo/swo/SWO_0000266
1385||838||MANOR||http://www.ebi.ac.uk/efo/swo/SWO_0000269
1386||838||MIcroarray Analysis Suite||http://www.ebi.ac.uk/efo/swo/SWO_0000271
1387||2696||Vertebrates||http://edamontology.org/topic_2820
1389||1964||MAQC data||http://www.ebi.ac.uk/efo/swo/SWO_0000270
1388||2888||Gene features (coding region) format||http://edamontology.org/format_2159
1390||137||Nucleic acid features (restriction sites) format||http://edamontology.org/format_2158
1391||1415||Unicellular eukaryotes||http://edamontology.org/topic_2821
1392||838||MAVI Pro||http://www.ebi.ac.uk/efo/swo/SWO_0000275
1393||137||Sequence features (repeats) format||http://edamontology.org/format_2155
1394||1965||MATLAB language||http://www.ebi.ac.uk/efo/swo/SWO_0000274
1395||3942||Protein structure alignment||http://edamontology.org/topic_2826
1396||1386||MicroArraySuite 5.0||http://www.ebi.ac.uk/efo/swo/SWO_0000272
1397||1513||X-ray diffraction||http://edamontology.org/topic_2828
1398||3942||Ontologies, nomenclature and classification||http://edamontology.org/topic_2829
1399||838||LMGene||http://www.ebi.ac.uk/efo/swo/SWO_0000254
1400||4017||Locally Moderated Weighted-t (LMW) method||http://www.ebi.ac.uk/efo/swo/SWO_0000255
1401||4017||Lognormal Normal Model||http://www.ebi.ac.uk/efo/swo/SWO_0000256
1402||4017||Lognormal Normal with Modied Variance Model||http://www.ebi.ac.uk/efo/swo/SWO_0000257
1403||838||LPE||http://www.ebi.ac.uk/efo/swo/SWO_0000258
1404||838||LPEadj||http://www.ebi.ac.uk/efo/swo/SWO_0000259
1405||3942||Nomenclature||http://edamontology.org/topic_2811
1406||3605||publisher role||http://www.ebi.ac.uk/efo/swo/SWO_0000260
1407||4017||Laplace mixture model||http://www.ebi.ac.uk/efo/swo/SWO_0000262
1408||3942||Humans||http://edamontology.org/topic_2815
1410||4017||Langmuir Isotherm||http://www.ebi.ac.uk/efo/swo/SWO_0000261
1409||2336||Protein structure analysis||http://edamontology.org/topic_2814
1411||4017||Loess algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000264
1412||3942||Disease genes and proteins||http://edamontology.org/topic_2813
1413||4017||Library Search Algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000263
1414||2696||Invertebrates||http://edamontology.org/topic_2819
1415||527||Eukaryotes||http://edamontology.org/topic_2818
1416||3942||Yeast||http://edamontology.org/topic_2817
1417||3942||Gene resources||http://edamontology.org/topic_2816
1418||3942||Protein secondary structure||http://edamontology.org/topic_0694
1419||838||MassSpecWavelet||http://www.ebi.ac.uk/efo/swo/SWO_0000289
1420||838||MantelCorr||http://www.ebi.ac.uk/efo/swo/SWO_0000288
1421||4017||Mahalanobis distance||http://www.ebi.ac.uk/efo/swo/SWO_0000287
1422||3942||Protein tertiary structure||http://edamontology.org/topic_0698
1423||3942||RNA structure||http://edamontology.org/topic_0697
1424||4017||Misclassification-Penalized Posteriors (MiPP)||http://www.ebi.ac.uk/efo/swo/SWO_0000296
1425||1386||MicroArraySuite 4.0||http://www.ebi.ac.uk/efo/swo/SWO_0000297
1426||838||Mfuzz||http://www.ebi.ac.uk/efo/swo/SWO_0000294
1427||838||MiPP||http://www.ebi.ac.uk/efo/swo/SWO_0000295
1428||838||MeasurementError.cor||http://www.ebi.ac.uk/efo/swo/SWO_0000292
1429||838||MergeMaid||http://www.ebi.ac.uk/efo/swo/SWO_0000293
1430||1763||Allergy, clinical immunology and immunotherapeutics.||http://edamontology.org/topic_3400
1431||1763||Pain medicine||http://edamontology.org/topic_3401
1432||4017||Markov Chain Monte Carlo||http://www.ebi.ac.uk/efo/swo/SWO_0000277
1433||4017||Multivariate correlation estimator||http://www.ebi.ac.uk/efo/swo/SWO_0000276
1434||838||MCRestimate||http://www.ebi.ac.uk/efo/swo/SWO_0000279
1435||4017||MCR algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000278
1436||838||MLInterfaces||http://www.ebi.ac.uk/efo/swo/SWO_0000283
1437||4017||MMD||http://www.ebi.ac.uk/efo/swo/SWO_0000284
1438||838||MVCClass||http://www.ebi.ac.uk/efo/swo/SWO_0000285
1439||838||MEDME||http://www.ebi.ac.uk/efo/swo/SWO_0000280
1440||4017|| MI ||http://www.ebi.ac.uk/efo/swo/SWO_0000281
1441||1964||Mutual information matrix (MIM)||http://www.ebi.ac.uk/efo/swo/SWO_0000282
1442||2456||Prediction and recognition (nucleic acid)||http://edamontology.org/operation_3024
1443||2456||Prediction and recognition (protein)||http://edamontology.org/operation_3023
1444||137||Ontology format||http://edamontology.org/format_2195
1445||1444||OBO format||http://edamontology.org/format_2196
1446||177||medline||http://edamontology.org/format_2194
1447||181||OWL format||http://edamontology.org/format_2197
1448||4017||Mixed model equations||http://www.ebi.ac.uk/efo/swo/SWO_0000298
1449||177||FASTQ-like format (text)||http://edamontology.org/format_2182
1450||1460||EMBLXML||http://edamontology.org/format_2183
1451||1460||cdsxml||http://edamontology.org/format_2184
1452||1460||insdxml||http://edamontology.org/format_2185
1453||177||EMBL-like (text)||http://edamontology.org/format_2181
1454||1453||geneseq||http://edamontology.org/format_2186
1455||177||UniProt-like (text)||http://edamontology.org/format_2187
1456||3942||UniProt format||http://edamontology.org/format_2188
1457||3942||ipi||http://edamontology.org/format_2189
1458||535||Toxins and targets||http://edamontology.org/topic_2661
1459||4039||spreadsheet format||http://www.ebi.ac.uk/swo/data/SWO_3000001
1461||181||RDF-XML||http://www.ebi.ac.uk/swo/data/SWO_3000007
1460||3560||EMBL format (XML)||http://edamontology.org/format_2204
1463||4039||RDF||http://www.ebi.ac.uk/swo/data/SWO_3000006
1462||3942||Sequence record lite format||http://edamontology.org/format_2203
1465||1466||DWG||http://www.ebi.ac.uk/swo/data/SWO_3000009
1464||3942||Sequence record full format||http://edamontology.org/format_2202
1466||4039||image format||http://www.ebi.ac.uk/swo/data/SWO_3000008
1468||1459||XML spreadsheet||http://www.ebi.ac.uk/swo/data/SWO_3000003
1467||177||FASTA-like (text)||http://edamontology.org/format_2200
1469||1459||XLS spreadsheet||http://www.ebi.ac.uk/swo/data/SWO_3000002
1470||3942||obsolete_XML_1470||http://www.ebi.ac.uk/swo/data/SWO_3000005
1471||1667||Matlab .m file||http://www.ebi.ac.uk/swo/data/SWO_3000004
1472||1763||Oncology||http://edamontology.org/topic_2640
1473||994||Membrane and  lipoproteins||http://edamontology.org/topic_0820
1474||994||Enzymes||http://edamontology.org/topic_0821
1475||1640||CGM||http://www.ebi.ac.uk/swo/data/SWO_3000012
1476||1640||BMP||http://www.ebi.ac.uk/swo/data/SWO_3000011
1477||1466||DXF||http://www.ebi.ac.uk/swo/data/SWO_3000010
1478||1640||GIF||http://www.ebi.ac.uk/swo/data/SWO_3000019
1479||1640||PNG||http://www.ebi.ac.uk/swo/data/SWO_3000018
1480||1640||JPEG||http://www.ebi.ac.uk/swo/data/SWO_3000017
1481||1640||TIFF||http://www.ebi.ac.uk/swo/data/SWO_3000016
1482||1483||pdf||http://www.ebi.ac.uk/swo/data/SWO_3000015
1483||4039||document exchange format||http://www.ebi.ac.uk/swo/data/SWO_3000014
1484||3942||CIP strain data format||http://edamontology.org/format_2211
1486||4039||web page specification||http://www.ebi.ac.uk/swo/data/SWO_3000013
1485||3942||Strain data format||http://edamontology.org/format_2210
1487||177||GenBank-like format (text)||http://edamontology.org/format_2205
1488||3456||Sequence feature table format (text)||http://edamontology.org/format_2206
1489||177||findkm||http://edamontology.org/format_1582
1490||3942||FSSP entry format||http://edamontology.org/format_1581
1491||3942||phylip property values||http://edamontology.org/format_2243
1492||3942||ProDom entry format||http://edamontology.org/format_1580
1493||3942||Superfamily entry format||http://edamontology.org/format_1578
1494||3942||TIGRFam entry format||http://edamontology.org/format_1579
1495||3942||InterPro entry abstract format||http://edamontology.org/format_1571
1496||3942||InterPro entry format||http://edamontology.org/format_1570
1497||3942||PIRSF entry format||http://edamontology.org/format_1573
1498||3942||Gene3D entry format||http://edamontology.org/format_1572
1499||3942||Panther Families and HMMs entry format||http://edamontology.org/format_1575
1500||3942||PRINTS entry format||http://edamontology.org/format_1574
1501||3942||SMART entry format||http://edamontology.org/format_1577
1502||3942||Pfam entry format||http://edamontology.org/format_1576
1503||3942||BIND entry format||http://edamontology.org/format_1568
1504||3942||IntAct entry format||http://edamontology.org/format_1569
1505||1815||Molecular medicine||http://edamontology.org/topic_3388
1506||2994||Marine biology||http://edamontology.org/topic_3387
1507||1513||Medical imaging||http://edamontology.org/topic_3384
1508||1513||Biological imaging||http://edamontology.org/topic_3383
1509||1825||Laboratory animal science||http://edamontology.org/topic_3386
1510||1513||Light microscopy||http://edamontology.org/topic_3385
1511||1521||Peptide identifier||http://edamontology.org/data_0988
1512||1526||Chromosome name||http://edamontology.org/data_0987
1513||1856||Imaging||http://edamontology.org/topic_3382
1514||1521||Protein identifier||http://edamontology.org/data_0989
1515||3942||Protein binding site signature||http://edamontology.org/data_1379
1516||3942||Entity collection identifier||http://edamontology.org/data_0980
1517||1518||FCS3.0||http://www.ebi.ac.uk/swo/data/SWO_3000062
1519||3942||Phenomenon identifier||http://edamontology.org/data_0981
1518||1686||Data File Standard for Flow Cytometry||http://www.ebi.ac.uk/swo/data/SWO_3000061
1521||1605||Molecule identifier||http://edamontology.org/data_0982
1520||1964||Affymetrix-compliant data||http://www.ebi.ac.uk/swo/data/SWO_3000060
1524||3942||Protein repeat signature||http://edamontology.org/data_1375
1523||1527||amino acid protein sequence data||http://www.ebi.ac.uk/swo/data/SWO_3000067
1522||1605||Atom ID||http://edamontology.org/data_0983
1525||3942||Protein site signature||http://edamontology.org/data_1376
1526||1521||Molecule name||http://edamontology.org/data_0984
1527||1964||biological sequence data||http://www.ebi.ac.uk/swo/data/SWO_3000066
1530||3942||Molecule type||http://edamontology.org/data_0985
1529||1527||DNA nucleotide sequence||http://www.ebi.ac.uk/swo/data/SWO_3000065
1528||3942||Protein conserved site signature||http://edamontology.org/data_1377
1532||4039||NONMEM data format||http://www.ebi.ac.uk/swo/data/SWO_3000064
1533||3942||Chemical identifier||http://edamontology.org/data_0986
1531||3942||Protein active site signature||http://edamontology.org/data_1378
1534||3942||SMART domain assignment report format||http://edamontology.org/format_1563
1535||3942||HMMER NULL hidden Markov model||http://edamontology.org/data_1371
1536||3942||Protein family signature||http://edamontology.org/data_1372
1537||3942||Protein domain signature||http://edamontology.org/data_1373
1538||3942||Protein region signature||http://edamontology.org/data_1374
1539||2194||BLASTN||http://www.ebi.ac.uk/swo/data/SWO_3000068
1540||1543||Preclinical and clinical studies||http://edamontology.org/topic_3379
1541||1542||Pharmacovigilence||http://edamontology.org/topic_3378
1542||1543||Safety sciences||http://edamontology.org/topic_3377
1543||1825||Medicines research and development||http://edamontology.org/topic_3376
1544||1543||Pharmacokinetics and pharmacodynamics||http://edamontology.org/topic_3375
1545||1543||Drug formulation and delivery||http://edamontology.org/topic_3374
1546||1543||Drug development||http://edamontology.org/topic_3373
1547||1778||Computer programming||http://edamontology.org/topic_3372
1548||1779||Synthetic chemistry||http://edamontology.org/topic_3371
1549||1779||Analytical chemistry||http://edamontology.org/topic_3370
1550||1558||Chemical name (INN)||http://edamontology.org/data_0999
1551||1558||Chemical name (IUPAC)||http://edamontology.org/data_0998
1552||3747||tabix file format||http://www.ebi.ac.uk/swo/data/SWO_3000070
1553||3942||Ligand identifier||http://edamontology.org/data_0992
1554||177||BedGraph||http://www.ebi.ac.uk/swo/data/SWO_3000072
1556||4039||genomedata format||http://www.ebi.ac.uk/swo/data/SWO_3000071
1555||65||Drug identifier||http://edamontology.org/data_0993
1557||181||MathML 2.0||http://www.ebi.ac.uk/swo/data/SWO_3000074
1558||65||Compound name||http://edamontology.org/data_0990
1559||1964||GMTK parameter data||http://www.ebi.ac.uk/swo/data/SWO_3000073
1560||3729||Chemical registry number||http://edamontology.org/data_0991
1561||3942||Hybrid sequence alignment (pair)||http://edamontology.org/data_1388
1563||1459||WKn||http://www.ebi.ac.uk/swo/data/SWO_3000076
1562||65||Monosaccharide identifier||http://edamontology.org/data_0996
1566||3942||Multiple nucleotide sequence alignment||http://edamontology.org/data_1389
1565||181||FieldML||http://www.ebi.ac.uk/swo/data/SWO_3000075
1564||1558||Chemical name (ChEBI)||http://edamontology.org/data_0997
1568||65||Amino acid identifier||http://edamontology.org/data_0994
1567||1575||Sequence alignment (nucleic acid pair)||http://edamontology.org/data_1386
1570||65||Nucleotide identifier||http://edamontology.org/data_0995
1569||1571||Sequence alignment (protein pair)||http://edamontology.org/data_1387
1571||473||Sequence alignment (protein)||http://edamontology.org/data_1384
1572||2730||Sequence alignment (hybrid)||http://edamontology.org/data_1385
1573||3942||Sequence alignment (multiple)||http://edamontology.org/data_1382
1574||177||ProQ report format||http://edamontology.org/format_1552
1575||2730||Sequence alignment (nucleic acid)||http://edamontology.org/data_1383
1576||3942||Protein post-translational modification signature||http://edamontology.org/data_1380
1577||177||Pcons report format||http://edamontology.org/format_1551
1578||2730||Sequence alignment (pair)||http://edamontology.org/data_1381
1579||1548||Chemical biology||http://edamontology.org/topic_3369
1580||1582||Ontology term||http://edamontology.org/data_0966
1581||1964||Keyword||http://edamontology.org/data_0968
1582||1060||Ontology concept data||http://edamontology.org/data_0967
1583||2076||Gap opening penalty||http://edamontology.org/data_1397
1585||2076||Gap extension penalty||http://edamontology.org/data_1398
1584||3762||Small molecule report||http://edamontology.org/data_0962
1587||398||Cell line report||http://edamontology.org/data_0963
1586||2076||Gap separation penalty||http://edamontology.org/data_1399
1588||3942||Scent annotation||http://edamontology.org/data_0964
1589||989||User metadata||http://edamontology.org/data_0960
1590||3942||Multiple protein sequence alignment||http://edamontology.org/data_1390
1591||433||Alignment score or penalty||http://edamontology.org/data_1394
1592||3942||Score end gaps control||http://edamontology.org/data_1395
1593||3942||Aligned sequence order||http://edamontology.org/data_1396
1594||1763||Veterinary medicine||http://edamontology.org/topic_3397
1595||1763||Systems medicine||http://edamontology.org/topic_3396
1596||1825||Regnerative medicine||http://edamontology.org/topic_3395
1597||1543||Regulatory affairs||http://edamontology.org/topic_3394
1598||1763||Geriatric medicine||http://edamontology.org/topic_3399
1599||263||Bioengineering||http://edamontology.org/topic_3398
1601||1543||Quality affairs||http://edamontology.org/topic_3393
1600||3942||Entity feature identifier||http://edamontology.org/data_0979
1602||3942||Discrete entity identifier||http://edamontology.org/data_0978
1603||1605||Tool identifier||http://edamontology.org/data_0977
1604||2994||Omics||http://edamontology.org/topic_3391
1606||1825||Nutritional science||http://edamontology.org/topic_3390
1605||2833||Identifier (typed)||http://edamontology.org/data_0976
1607||3942||Entity identifier||http://edamontology.org/data_0974
1608||3942||Data resource identifier||http://edamontology.org/data_0975
1609||418||Text mining report||http://edamontology.org/data_0972
1610||418||Citation||http://edamontology.org/data_0970
1611||1964||Article||http://edamontology.org/data_0971
1612||396||Mass spectrometry spectra||http://edamontology.org/data_0943
1613||396||Peptide mass fingerprint||http://edamontology.org/data_0944
1614||2055||Peptide identification||http://edamontology.org/data_0945
1615||3942||Pathway or network annotation||http://edamontology.org/data_0946
1616||3942||Biological pathway map||http://edamontology.org/data_0947
1617||3942||Sequence database hits alignments list||http://edamontology.org/data_1339
1618||3942||Data resource definition||http://edamontology.org/data_0948
1619||989||Workflow metadata||http://edamontology.org/data_0949
1620||3942||REBASE withrefm enzyme report format||http://edamontology.org/format_1516
1621||3942||BRENDA enzyme report format||http://edamontology.org/format_1512
1622||1825||Immunology||http://edamontology.org/topic_0804
1624||3942||Human disease||http://edamontology.org/topic_0803
1623||3942||KEGG REACTION enzyme report format||http://edamontology.org/format_1513
1625||3942||KEGG ENZYME enzyme report format||http://edamontology.org/format_1514
1626||3942||REBASE proto enzyme report format||http://edamontology.org/format_1515
1627||4039||outline document format||http://www.ebi.ac.uk/swo/data/SWO_3000026
1628||1627||OmniOutline format||http://www.ebi.ac.uk/swo/data/SWO_3000027
1629||3942||MHC Class II epitopes report||http://edamontology.org/data_1330
1630||1483||PostScript||http://www.ebi.ac.uk/swo/data/SWO_3000024
1631||1483||tex||http://www.ebi.ac.uk/swo/data/SWO_3000025
1632||1627||OPML||http://www.ebi.ac.uk/swo/data/SWO_3000028
1633||1640||JPEG 2000||http://www.ebi.ac.uk/swo/data/SWO_3000029
1634||3942||Sequence database hits scores list||http://edamontology.org/data_1338
1636||373||Electron microscopy volume map||http://edamontology.org/data_0940
1635||1642||SVG||http://www.ebi.ac.uk/swo/data/SWO_3000022
1637||3942||Protein features (PEST sites)||http://edamontology.org/data_1331
1638||1642||AI||http://www.ebi.ac.uk/swo/data/SWO_3000023
1640||1466||raster image format||http://www.ebi.ac.uk/swo/data/SWO_3000020
1639||1803||2D PAGE image||http://edamontology.org/data_0942
1642||1466||vector image format||http://www.ebi.ac.uk/swo/data/SWO_3000021
1641||3117||Electron microscopy model||http://edamontology.org/data_0941
1643||3668||Data index report||http://edamontology.org/data_0956
1644||989||Database metadata||http://edamontology.org/data_0957
1645||3740||Database cross-mapping||http://edamontology.org/data_0954
1646||1964||Data index||http://edamontology.org/data_0955
1647||989||Tool metadata||http://edamontology.org/data_0958
1648||3942||Job metadata||http://edamontology.org/data_0959
1649||177||aaindex||http://edamontology.org/format_1504
1650||3942||IntEnz enzyme report format||http://edamontology.org/format_1511
1651||1667||.class file||http://www.ebi.ac.uk/swo/data/SWO_3000035
1652||181||CopasiML||http://www.ebi.ac.uk/swo/data/SWO_3000036
1653||3942||Sequence database hits evaluation data||http://edamontology.org/data_1340
1654||3942||obsolete_SBML||http://www.ebi.ac.uk/swo/data/SWO_3000037
1655||181||OWL-XML||http://www.ebi.ac.uk/swo/data/SWO_3000038
1656||181||OWL2-XML||http://www.ebi.ac.uk/swo/data/SWO_3000039
1657||3942||HMM emission and transition counts||http://edamontology.org/data_1348
1658||1669||Dirichlet distribution||http://edamontology.org/data_1347
1660||4039||word processing document format||http://www.ebi.ac.uk/swo/data/SWO_3000030
1659||3942||MEME motifs directive file||http://edamontology.org/data_1346
1661||3942||MEME background frequencies file||http://edamontology.org/data_1345
1663||3942||Version information||http://edamontology.org/data_0953
1662||1660||WordStar format||http://www.ebi.ac.uk/swo/data/SWO_3000031
1665||3942||MEME motif alphabet||http://edamontology.org/data_1344
1664||1660||Microsoft Word doc||http://www.ebi.ac.uk/swo/data/SWO_3000032
1666||3942||EMBOSS database resource definition||http://edamontology.org/data_0952
1667||4039||programming language format||http://www.ebi.ac.uk/swo/data/SWO_3000033
1668||3804||Statistical estimate score||http://edamontology.org/data_0951
1670||1667||.java file||http://www.ebi.ac.uk/swo/data/SWO_3000034
1669||1964||Mathematical model||http://edamontology.org/data_0950
1671||1177||Sequence assembly||http://edamontology.org/data_0925
1672||373||Radiation Hybrid (RH) scores||http://edamontology.org/data_0926
1673||3763||Genetic linkage report||http://edamontology.org/data_0927
1674||966||Gene expression profile||http://edamontology.org/data_0928
1675||3942||Nucleic acid features report (primers)||http://edamontology.org/data_0922
1676||3942||PCR experiment report||http://edamontology.org/data_0923
1677||373||Sequence trace||http://edamontology.org/data_0924
1678||3942||obsolete_PSI-MI format||http://www.ebi.ac.uk/swo/data/SWO_3000048
1679||177||SIF||http://www.ebi.ac.uk/swo/data/SWO_3000049
1681||1688||tab delimited file format||http://www.ebi.ac.uk/swo/data/SWO_3000046
1682||1964||Regular expression||http://edamontology.org/data_1352
1680||3942||Domainatrix 3D-1D scoring matrix format||http://edamontology.org/format_1500
1683||2741||Sequence profile||http://edamontology.org/data_1354
1685||3942||obsolete_MAGE tab format||http://www.ebi.ac.uk/swo/data/SWO_3000045
1684||2741||Sequence motif||http://edamontology.org/data_1353
1686||1688||ASCII format||http://www.ebi.ac.uk/swo/data/SWO_3000042
1687||3668||Genotype/phenotype report||http://edamontology.org/data_0920
1688||177||plain text file format||http://www.ebi.ac.uk/swo/data/SWO_3000043
1689||3217||Protein signature||http://edamontology.org/data_1355
1690||3942||obsolete_OBO flat file format||http://www.ebi.ac.uk/swo/data/SWO_3000040
1691||3942||Prosite nucleotide pattern||http://edamontology.org/data_1358
1692||3942||obsolete_text file format||http://www.ebi.ac.uk/swo/data/SWO_3000041
1693||3942||Prosite protein pattern||http://edamontology.org/data_1359
1694||397||Protein NMR data||http://edamontology.org/data_0938
1695||397||Protein circular dichroism (CD) spectroscopic data||http://edamontology.org/data_0939
1696||394||Sequence tag profile (with gene assignment)||http://edamontology.org/data_0936
1697||397||Protein X-ray crystallographic data||http://edamontology.org/data_0937
1698||3942||MPSS experimental data||http://edamontology.org/data_0934
1699||3942||SBS experimental data||http://edamontology.org/data_0935
1700||3942||Oligonucleotide probe data||http://edamontology.org/data_0932
1701||3942||SAGE experimental data||http://edamontology.org/data_0933
1702||1145||predictive modeling algorithm||http://www.ebi.ac.uk/swo/algorithm/OntoDM_382176
1704||1686||CDF ASCII format||http://www.ebi.ac.uk/swo/data/SWO_3000057
1703||3634||Information content matrix||http://edamontology.org/data_1363
1705||176||BAR||http://www.ebi.ac.uk/swo/data/SWO_3000058
1706||3634||Position weight matrix||http://edamontology.org/data_1362
1708||1686||CEL ASCII format||http://www.ebi.ac.uk/swo/data/SWO_3000059
1707||3634||Position frequency matrix||http://edamontology.org/data_1361
1709||3942||Microarray experiment report||http://edamontology.org/data_0931
1710||3605||Knowledge representation role||http://www.ebi.ac.uk/swo/data/SWO_3000053
1712||1461||BioPAX RDF/XML format||http://www.ebi.ac.uk/swo/data/SWO_3000055
1711||3634||Fingerprint||http://edamontology.org/data_1365
1713||177||BioPAX Manchester OWL Syntax format||http://www.ebi.ac.uk/swo/data/SWO_3000056
1714||1683||Hidden Markov model||http://edamontology.org/data_1364
1715||181||GML||http://www.ebi.ac.uk/swo/data/SWO_3000050
1716||181||XGMML||http://www.ebi.ac.uk/swo/data/SWO_3000051
1718||3942||Domainatrix signature||http://edamontology.org/data_1368
1717||1964||Interaction data||http://www.ebi.ac.uk/swo/data/SWO_3000052
1719||3168||Sequencing error detection||http://edamontology.org/operation_3195
1721||839||matrix manipulation||http://www.ebi.ac.uk/swo/objective/SWO_40000002
1720||2837||Genome feature comparison||http://edamontology.org/operation_3194
1722||3942||Gene and transcript structure (report)||http://edamontology.org/data_1300
1724||3942||Mobile genetic elements||http://edamontology.org/data_1301
1723||3394||Sequence trimming||http://edamontology.org/operation_3192
1725||3942||Nucleic acid features report (PolyA signal or site)||http://edamontology.org/data_1302
1726||1723||Trim to reference||http://edamontology.org/operation_3191
1727||3942||Nucleic acid features (quadruplexes)||http://edamontology.org/data_1303
1728||1723||Trim vector||http://edamontology.org/operation_3190
1729||3942||Nucleic acid features report (CpG island and isochore)||http://edamontology.org/data_1304
1730||3942||Nucleic acid features report (restriction sites)||http://edamontology.org/data_1305
1731||3091||Rate of association||http://edamontology.org/data_3451
1732||4017|| Needleman-Wunsch ||http://www.ebi.ac.uk/efo/swo/SWO_0000304
1733||4017||Nested Effects Models||http://www.ebi.ac.uk/efo/swo/SWO_0000305
1734||4017||Nonlinear Estimation by Iterative Partial Least Squares||http://www.ebi.ac.uk/efo/swo/SWO_0000306
1735||3942||Nucleic acid features report (splice sites)||http://edamontology.org/data_1307
1736||3942||Nucleosome exclusion sequences||http://edamontology.org/data_1306
1737||838||OCplus||http://www.ebi.ac.uk/efo/swo/SWO_0000307
1738||3942||Gene features (exonic splicing enhancer)||http://edamontology.org/data_1309
1739||838||OLIN||http://www.ebi.ac.uk/efo/swo/SWO_0000308
1740||1723||Trim ends||http://edamontology.org/operation_3189
1742||3942||Nucleic acid features report (matrix/scaffold attachment sites)||http://edamontology.org/data_1308
1741||838||OLINgui||http://www.ebi.ac.uk/efo/swo/SWO_0000309
1743||2592||Sequence contamination filtering||http://edamontology.org/operation_3187
1744||3138||Base-calling||http://edamontology.org/operation_3185
1745||1205||Bisulfite mapping||http://edamontology.org/operation_3186
1746||1825||Parasitology||http://edamontology.org/topic_3302
1747||1825||Microbiology||http://edamontology.org/topic_3301
1748||1763||Physiology||http://edamontology.org/topic_3300
1749||1750||Genotyping||http://edamontology.org/operation_3196
1750||3168||Genetic variation analysis||http://edamontology.org/operation_3197
1751||1205||Read mapping||http://edamontology.org/operation_3198
1752||1751||Split read mapping||http://edamontology.org/operation_3199
1753||3942||Protein features (post-translation modifications)||http://edamontology.org/data_1324
1754||3942||Protein features report (active sites)||http://edamontology.org/data_1325
1755||3942||Protein features report (binding sites)||http://edamontology.org/data_1326
1756||3942||Protein features (epitopes)||http://edamontology.org/data_1327
1757||0||DeprecatedClass||http://www.w3.org/2002/07/owl#DeprecatedClass
1758||3942||Protein features (sites)||http://edamontology.org/data_1321
1759||3942||Protein features report (signal peptides)||http://edamontology.org/data_1322
1760||3942||Protein features report (cleavage sites)||http://edamontology.org/data_1323
1761||1778||Computational biology||http://edamontology.org/topic_3307
1762||526||Transcriptomics||http://edamontology.org/topic_3308
1763||2229||Medicine||http://edamontology.org/topic_3303
1764||1825||Neurobiology||http://edamontology.org/topic_3304
1765||1763||Public health and epidemiology||http://edamontology.org/topic_3305
1766||1777||Biophysics||http://edamontology.org/topic_3306
1767||3942||MHC Class I epitopes report||http://edamontology.org/data_1329
1768||3942||Protein features report (nucleic acid binding sites)||http://edamontology.org/data_1328
1769||3942||Transcription factor binding sites||http://edamontology.org/data_1315
1770||3942||Coding region||http://edamontology.org/data_1313
1771||1803||MRI image||http://edamontology.org/data_3442
1772||3942||Gene features (SECIS element)||http://edamontology.org/data_1314
1773||3942||Gene features report (operon)||http://edamontology.org/data_1311
1774||3942||Nucleic acid features report (promoters)||http://edamontology.org/data_1312
1775||3942||Nucleic acid features (microRNA)||http://edamontology.org/data_1310
1776||2035||Cell migration track image||http://edamontology.org/data_3449
1777||2229||Physics||http://edamontology.org/topic_3318
1778||2229||Computer science||http://edamontology.org/topic_3316
1779||2229||Chemistry||http://edamontology.org/topic_3314
1780||2229||Mathematics||http://edamontology.org/topic_3315
1781||499||Infectious disease||http://edamontology.org/topic_3324
1782||3942||Metabolic disease||http://edamontology.org/topic_3323
1783||1763||Respiratory medicine||http://edamontology.org/topic_3322
1784||2965||Molecular genetics||http://edamontology.org/topic_3321
1785||1784||RNA splicing||http://edamontology.org/topic_3320
1786||499||Rare diseases||http://edamontology.org/topic_3325
1787||838||RankProd||http://www.ebi.ac.uk/efo/swo/SWO_0000350
1788||838||RbcBook1||http://www.ebi.ac.uk/efo/swo/SWO_0000352
1789||838||RMAExpress||http://www.ebi.ac.uk/efo/swo/SWO_0000343
1790||4017||RMA ||http://www.ebi.ac.uk/efo/swo/SWO_0000342
1791||1789||RMAExpress quantification||http://www.ebi.ac.uk/efo/swo/SWO_0000345
1792||1789||RMAExpress 2.0||http://www.ebi.ac.uk/efo/swo/SWO_0000344
1793||838||RNAither||http://www.ebi.ac.uk/efo/swo/SWO_0000347
1794||1778||Computational chemistry||http://edamontology.org/topic_3332
1795||838||RMAGEML||http://www.ebi.ac.uk/efo/swo/SWO_0000346
1797||838||RWebServices||http://www.ebi.ac.uk/efo/swo/SWO_0000349
1796||1763||Neurology||http://edamontology.org/topic_3334
1799||838||ROC||http://www.ebi.ac.uk/efo/swo/SWO_0000348
1798||1763||Cardiology||http://edamontology.org/topic_3335
1800||294||Microbial collection||http://edamontology.org/topic_3339
1801||294||Mouse clinic||http://edamontology.org/topic_3338
1802||294||Biobank||http://edamontology.org/topic_3337
1803||2035||Raw image||http://edamontology.org/data_3424
1804||1543||Drug discovery||http://edamontology.org/topic_3336
1805||4017||RMA_1805||http://www.ebi.ac.uk/efo/swo/SWO_0000340
1806||3942||Proteomics experiment report||http://edamontology.org/data_3426
1808||4017||RMA _1808||http://www.ebi.ac.uk/efo/swo/SWO_0000341
1807||3775||Carbohydrate property||http://edamontology.org/data_3425
1809||3942||Simulation experiment report||http://edamontology.org/data_3428
1810||3942||RNAi report||http://edamontology.org/data_3427
1811||4017||Regression model||http://www.ebi.ac.uk/efo/swo/SWO_0000339
1812||4017||R interface to boost graph library algorithm (RBGL)||http://www.ebi.ac.uk/efo/swo/SWO_0000334
1813||294||Clone library||http://edamontology.org/topic_3341
1814||838||RBGL||http://www.ebi.ac.uk/efo/swo/SWO_0000333
1815||1763||Translational medicine||http://edamontology.org/topic_3342
1816||4017||Radial basis function||http://www.ebi.ac.uk/efo/swo/SWO_0000332
1818||294||Cell culture collection||http://edamontology.org/topic_3340
1817||1833||QuantArray version 2||http://www.ebi.ac.uk/efo/swo/SWO_0000331
1819||838||RLMM||http://www.ebi.ac.uk/efo/swo/SWO_0000338
1820||2990||Data identity and mapping||http://edamontology.org/topic_3345
1821||4017||Recursive Feature Elimination (RFE)||http://www.ebi.ac.uk/efo/swo/SWO_0000337
1822||2331||Sequence search||http://edamontology.org/topic_3346
1824||4017||Random effects model||http://www.ebi.ac.uk/efo/swo/SWO_0000336
1823||1804||Compound libraries and screening||http://edamontology.org/topic_3343
1826||838||RBioinf||http://www.ebi.ac.uk/efo/swo/SWO_0000335
1825||1763||Biomedical science||http://edamontology.org/topic_3344
1827||2714||Sequence file editing||http://edamontology.org/operation_2121
1828||3942||Listfile processing||http://edamontology.org/operation_2120
1829||1833||QuantArray, PackaardBiochip technologies||http://www.ebi.ac.uk/efo/swo/SWO_0000330
1830||3942||Small molecule data processing||http://edamontology.org/operation_2123
1831||3942||Sequence alignment file processing||http://edamontology.org/operation_2122
1832||1325||data integration algorithm||http://kt.ijs.si/panovp/OntoDM#OntoDM-KDD_776185
1833||838||QuantArray scanner software||http://www.ebi.ac.uk/efo/swo/SWO_0000329
1834||4017||PLIER (Probe Logarithmic Error Intensity Estimate) method||http://www.ebi.ac.uk/efo/swo/SWO_0000328
1835||838||Pathways 2.01 software||http://www.ebi.ac.uk/efo/swo/SWO_0000324
1836||1396||Probe Cell Analysis||http://www.ebi.ac.uk/efo/swo/SWO_0000327
1837||4017||Power Law Global Error Model (PLGEM) analysis method||http://www.ebi.ac.uk/efo/swo/SWO_0000326
1838||4017||PPC algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000321
1839||4017||Probe level Locally moderated Weighted median-t (PLW) method||http://www.ebi.ac.uk/efo/swo/SWO_0000320
1840||4017||Propagation of uncertainty in microarray analysis||http://www.ebi.ac.uk/efo/swo/SWO_0000323
1841||838||PROcess||http://www.ebi.ac.uk/efo/swo/SWO_0000322
1842||2994||Biomarkers||http://edamontology.org/topic_3360
1843||838||PLPE||http://www.ebi.ac.uk/efo/swo/SWO_0000319
1844||4017|| PLM ||http://www.ebi.ac.uk/efo/swo/SWO_0000318
1845||838||PGSEA||http://www.ebi.ac.uk/efo/swo/SWO_0000317
1846||838||PCpheno||http://www.ebi.ac.uk/efo/swo/SWO_0000316
1848||4017||Pearson correlation estimator||http://www.ebi.ac.uk/efo/swo/SWO_0000315
1847||263||Biomaterials||http://edamontology.org/topic_3368
1850||838||PAnnBuilder||http://www.ebi.ac.uk/efo/swo/SWO_0000314
1849||2990||Data analysis||http://edamontology.org/topic_3365
1852||4017||Presence-Absence calls with Negative Probesets (PANP)||http://www.ebi.ac.uk/efo/swo/SWO_0000313
1851||2990||Data integration||http://edamontology.org/topic_3366
1853||838||OutlierD||http://www.ebi.ac.uk/efo/swo/SWO_0000312
1854||838||OrderedList||http://www.ebi.ac.uk/efo/swo/SWO_0000311
1855||838||Optiquant||http://www.ebi.ac.uk/efo/swo/SWO_0000310
1856||2229||Laboratory techniques||http://edamontology.org/topic_3361
1857||838||SPIA||http://www.ebi.ac.uk/efo/swo/SWO_0000388
1858||4017||Semantic Similarity Measures||http://www.ebi.ac.uk/efo/swo/SWO_0000389
1859||4017||SNPRMA algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000386
1860||838||SNPchip||http://www.ebi.ac.uk/efo/swo/SWO_0000387
1861||526||Comparative genomics||http://edamontology.org/topic_0797
1862||2845||Mobile genetic elements||http://edamontology.org/topic_0798
1863||3942||Genetic mapping and linkage||http://edamontology.org/topic_0796
1864||3605||software developer role||http://www.ebi.ac.uk/efo/swo/SWO_0000392
1865||4017||SVDimpute algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000391
1866||838||SSPA||http://www.ebi.ac.uk/efo/swo/SWO_0000390
1867||513||software developer organization||http://www.ebi.ac.uk/efo/swo/SWO_0000396
1868||3942||obsolete_Information processing||http://www.ebi.ac.uk/efo/swo/SWO_0000393
1869||838||SAS/STAT Software, Version 8||http://www.ebi.ac.uk/efo/swo/SWO_0000375
1870||838||SBMLR||http://www.ebi.ac.uk/efo/swo/SWO_0000377
1871||177||SBMLR format||http://www.ebi.ac.uk/efo/swo/SWO_0000378
1872||3942||obsolete_SBML file||http://www.ebi.ac.uk/efo/swo/SWO_0000379
1873||177||SDF format||http://www.ebi.ac.uk/efo/swo/SWO_0000381
1874||3942||obsolete_SBML model||http://www.ebi.ac.uk/efo/swo/SWO_0000380
1875||838||SLGI||http://www.ebi.ac.uk/efo/swo/SWO_0000383
1876||838||SIM||http://www.ebi.ac.uk/efo/swo/SWO_0000382
1877||838||SMAP||http://www.ebi.ac.uk/efo/swo/SWO_0000385
1878||838||SLqPCR||http://www.ebi.ac.uk/efo/swo/SWO_0000384
1879||838||Rredland||http://www.ebi.ac.uk/efo/swo/SWO_0000368
1880||838||Rtreemix||http://www.ebi.ac.uk/efo/swo/SWO_0000369
1881||838||RpsiXML||http://www.ebi.ac.uk/efo/swo/SWO_0000367
1882||4017||Robust likelihood-based survival modeling||http://www.ebi.ac.uk/efo/swo/SWO_0000364
1883||838||Rosetta Resolver||http://www.ebi.ac.uk/efo/swo/SWO_0000365
1884||3942||Mitochondria||http://edamontology.org/topic_0779
1885||527||Pathogens||http://edamontology.org/topic_0783
1886||1415||Fungi||http://edamontology.org/topic_0782
1887||527||Viruses||http://edamontology.org/topic_0781
1888||1415||Plants||http://edamontology.org/topic_0780
1889||4017||SAM||http://www.ebi.ac.uk/efo/swo/SWO_0000374
1890||838||SAGx||http://www.ebi.ac.uk/efo/swo/SWO_0000373
1891||4017||Serial Analysis of Gene Expression (SAGE)||http://www.ebi.ac.uk/efo/swo/SWO_0000372
1892||4017||S-Score algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000371
1893||838||Ruuid||http://www.ebi.ac.uk/efo/swo/SWO_0000370
1894||838||Resourcerer||http://www.ebi.ac.uk/efo/swo/SWO_0000358
1895||838||Rgraphviz||http://www.ebi.ac.uk/efo/swo/SWO_0000359
1896||838||Rdbi||http://www.ebi.ac.uk/efo/swo/SWO_0000353
1897||838||RdbiPgSQL||http://www.ebi.ac.uk/efo/swo/SWO_0000354
1898||838||Rdisop||http://www.ebi.ac.uk/efo/swo/SWO_0000355
1899||838||RefPlus||http://www.ebi.ac.uk/efo/swo/SWO_0000356
1900||3942||Arabidopsis||http://edamontology.org/topic_0786
1901||3942||Rice||http://edamontology.org/topic_0787
1902||838||Rintact||http://www.ebi.ac.uk/efo/swo/SWO_0000361
1903||838||Ringo||http://www.ebi.ac.uk/efo/swo/SWO_0000360
1904||177||Rnw||http://www.ebi.ac.uk/efo/swo/SWO_0000363
1905||838||Rmagpie||http://www.ebi.ac.uk/efo/swo/SWO_0000362
1906||1964||Sequence variations||http://edamontology.org/data_3498
1907||3614||Chemical structure sketch||http://edamontology.org/data_3490
1908||3217||Nucleic acid signature||http://edamontology.org/data_3492
1909||2044||RNA sequence||http://edamontology.org/data_3495
1910||2044||DNA sequence||http://edamontology.org/data_3494
1911||1910||DNA sequence (raw)||http://edamontology.org/data_3497
1912||1909||RNA sequence (raw)||http://edamontology.org/data_3496
1913||3768||Gene order||http://edamontology.org/data_3479
1914||3265||REST service||http://www.ebi.ac.uk/swo/interface/SWO_5000005
1915||3265||JSON web service||http://www.ebi.ac.uk/swo/interface/SWO_5000006
1916||3267||web user interface||http://www.ebi.ac.uk/swo/interface/SWO_5000002
1917||3267||desktop graphical user interface||http://www.ebi.ac.uk/swo/interface/SWO_5000003
1918||3265||SOAP service||http://www.ebi.ac.uk/swo/interface/SWO_5000004
1919||4017||50-50 MANOVA algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000398
1920||513||software publisher organization||http://www.ebi.ac.uk/efo/swo/SWO_0000397
1921||3942||obsolete_html||http://www.ebi.ac.uk/efo/swo/SWO_0000399
1922||1925||NMR spectrum||http://edamontology.org/data_3488
1923||2461||Sequence assembly validation||http://edamontology.org/operation_3180
1924||2557||Protein-drug interaction report||http://edamontology.org/data_2402
1925||1964||Spectrum||http://edamontology.org/data_3483
1927||3942||Toxin annotation||http://edamontology.org/data_2400
1926||3540||Localized reassembly||http://edamontology.org/operation_3183
1928||3942||Protein report (membrane protein)||http://edamontology.org/data_2401
1929||189||Sequence assembly visualisation||http://edamontology.org/operation_3184
1930||2949||Genome alignment||http://edamontology.org/operation_3182
1931||3942||Sequence profile data||http://edamontology.org/data_2982
1932||3942||Sequence motif data||http://edamontology.org/data_2981
1933||3668||Pathway or network report||http://edamontology.org/data_2984
1934||3942||Pathway or network data||http://edamontology.org/data_2983
1935||3942||Nucleic acid classification_1935||http://edamontology.org/data_2986
1936||2431||Nucleic acid thermodynamic data||http://edamontology.org/data_2985
1937||3942||Classification report||http://edamontology.org/data_2987
1938||3942||KEGG GENES gene report format||http://edamontology.org/format_1610
1939||3942||Protein classification_1939||http://edamontology.org/data_2980
1940||3942||Ensembl gene report format||http://edamontology.org/format_1603
1941||3942||EcoCyc gene report format||http://edamontology.org/format_1607
1942||3942||DragonDB gene report format||http://edamontology.org/format_1606
1944||328||predictive model specification||http://kt.ijs.si/panovp/OntoDM#OntoDM_000228
1943||838||matlab software||http://www.ebi.ac.uk/efo/swo/Class_6
1945||3942||CGD gene report format||http://edamontology.org/format_1605
1946||3942||DictyBase gene report format||http://edamontology.org/format_1604
1947||3942||Protein features report (key folding sites)||http://edamontology.org/data_2989
1948||3942||Gramene gene report format||http://edamontology.org/format_1609
1949||3942||FlyBase gene report format||http://edamontology.org/format_1608
1950||419||Phylogenetic character weights||http://edamontology.org/data_2994
1951||472||Protein structure image||http://edamontology.org/data_2992
1952||3091||Protein torsion angle data||http://edamontology.org/data_2991
1953||3942||dbSNP polymorphism report format||http://edamontology.org/format_1620
1954||3942||MGD gene report format||http://edamontology.org/format_1612
1955||3942||MaizeGDB gene report format||http://edamontology.org/format_1611
1956||3942||SGD gene report format||http://edamontology.org/format_1614
1958||3942||RGD gene report format||http://edamontology.org/format_1613
1957||2962||predictive modeling task||http://kt.ijs.si/panovp/OntoDM#OntoDM_000235
1959||3942||TAIR gene report format||http://edamontology.org/format_1616
1960||3942||GeneDB gene report format||http://edamontology.org/format_1615
1961||3942||ZFIN gene report format||http://edamontology.org/format_1618
1962||3942||WormBase gene report format||http://edamontology.org/format_1617
1963||3942||TIGR gene report format||http://edamontology.org/format_1619
1964||4024||data||http://purl.obolibrary.org/obo/IAO_0000027
1965||4024||programming language||http://purl.obolibrary.org/obo/IAO_0000025
1966||177||exp||http://edamontology.org/format_1631
1967||176||SCF||http://edamontology.org/format_1632
1969||3942||Gene cluster||http://edamontology.org/data_2198
1968||177||CAF||http://edamontology.org/format_1630
1970||989||Database entry metadata||http://edamontology.org/data_2193
1971||3942||Error||http://edamontology.org/data_2192
1972||177||mira||http://edamontology.org/format_1629
1973||176||ABI||http://edamontology.org/format_1628
1974||177||Primer3 primer||http://edamontology.org/format_1627
1975||3942||KEGG DISEASE entry format||http://edamontology.org/format_1626
1976||3942||HIVDB entry format||http://edamontology.org/format_1625
1977||3942||HGVbase entry format||http://edamontology.org/format_1624
1978||3942||OMIM entry format||http://edamontology.org/format_1623
1979||3942||ArrayExpress entry format||http://edamontology.org/format_1640
1980||177||affymetrix-exp||http://edamontology.org/format_1641
1982||177||cel||http://edamontology.org/format_1638
1981||392||Sequence checksum||http://edamontology.org/data_2190
1984||3942||Protein features report (chemical modifications)||http://edamontology.org/data_2191
1983||177||dat||http://edamontology.org/format_1637
1985||177||affymetrix||http://edamontology.org/format_1639
1986||177||PHD||http://edamontology.org/format_1633
1987||1145||probability distribution estimation algorithm||http://kt.ijs.si/panovp/OntoDM#OntoDM_000253
1988||3942||INOH entry format||http://edamontology.org/format_1650
1989||3942||Sequence set (stream)||http://edamontology.org/data_2173
1991||3942||CPDB entry format||http://edamontology.org/format_1654
1990||49||FlyBase secondary identifier||http://edamontology.org/data_2174
1992||3942||aMAZE entry format||http://edamontology.org/format_1653
1993||3942||Cardinality||http://edamontology.org/data_2176
1994||3942||Reactome entry format||http://edamontology.org/format_1652
1995||3942||PATIKA entry format||http://edamontology.org/format_1651
1996||3942||Exactly 1||http://edamontology.org/data_2177
1997||3942||1 or more||http://edamontology.org/data_2178
1998||3942||Exactly 2||http://edamontology.org/data_2179
1999||2962||clustering task||http://kt.ijs.si/panovp/OntoDM#OntoDM_000264
2000||3942||KEGG PATHWAY entry format||http://edamontology.org/format_1647
2001||177||CHP||http://edamontology.org/format_1644
2002||3942||EMDB entry format||http://edamontology.org/format_1645
2003||3942||MetaCyc entry format||http://edamontology.org/format_1648
2004||3942||2 or more||http://edamontology.org/data_2180
2005||3942||HumanCyc entry format||http://edamontology.org/format_1649
2006||2750||Sequence similarity plot||http://edamontology.org/data_2161
2007||3665||Helical wheel||http://edamontology.org/data_2162
2008||3715||Fickett testcode plot||http://edamontology.org/data_2160
2009||3091||Protein ionization curve||http://edamontology.org/data_2165
2010||1154||Sequence composition plot||http://edamontology.org/data_2166
2011||181||Taverna workflow format||http://edamontology.org/format_1665
2012||3665||Helical net||http://edamontology.org/data_2163
2013||3942||Protein sequence properties plot||http://edamontology.org/data_2164
2014||3942||Nucleic acid features (siRNA)||http://edamontology.org/data_2169
2015||1154||Nucleic acid density plot||http://edamontology.org/data_2167
2016||2037||Sequence trace image||http://edamontology.org/data_2168
2017||3942||Article report||http://edamontology.org/data_2954
2018||3668||Sequence report||http://edamontology.org/data_2955
2019||2762||Nucleic acid probability profile||http://edamontology.org/data_2959
2020||2762||Nucleic acid melting curve||http://edamontology.org/data_2958
2021||2587||Hopp and Woods plot||http://edamontology.org/data_2957
2022||2578||Protein secondary structure report||http://edamontology.org/data_2956
2023||3942||Panther Pathways entry format||http://edamontology.org/format_1655
2024||3942||Rendering parameter||http://edamontology.org/data_2152
2025||142||Sequence name||http://edamontology.org/data_2154
2026||3942||Sequence profile name||http://edamontology.org/data_2150
2027||3942||Color||http://edamontology.org/data_2151
2028||3942||2D PAGE gel report||http://edamontology.org/data_2965
2029||3141||Oligonucleotide probe sets annotation||http://edamontology.org/data_2966
2030||3942||Date||http://edamontology.org/data_2156
2032||3942||Word composition||http://edamontology.org/data_2157
2031||2762||Nucleic acid temperature profile||http://edamontology.org/data_2960
2033||3942||Gene regulatory network report||http://edamontology.org/data_2961
2034||328||probability distribution specification||http://kt.ijs.si/panovp/OntoDM#OntoDM_000285
2035||1964||Image||http://edamontology.org/data_2968
2036||3942||Microarray image||http://edamontology.org/data_2967
2037||2018||Sequence image||http://edamontology.org/data_2969
2038||3942||BioModel mathematical model format||http://edamontology.org/format_1666
2039||3942||EMBOSS report||http://edamontology.org/data_2143
2040||3942||Window step size||http://edamontology.org/data_2141
2041||3942||EMBOSS graph||http://edamontology.org/data_2142
2042||3648||Concentration||http://edamontology.org/data_2140
2043||3684||Protein sequence||http://edamontology.org/data_2976
2044||3684||Nucleic acid sequence||http://edamontology.org/data_2977
2046||3942||Database category name||http://edamontology.org/data_2149
2045||2043||Protein sequence (raw)||http://edamontology.org/data_2974
2047||2044||Nucleic acid sequence (raw)||http://edamontology.org/data_2975
2048||3942||Workflow||http://edamontology.org/data_2972
2049||3942||Protein report (transcription factor)||http://edamontology.org/data_2147
2050||3942||Secondary structure data||http://edamontology.org/data_2973
2051||3942||Sequence offset||http://edamontology.org/data_2145
2052||3091||Protein hydropathy data||http://edamontology.org/data_2970
2054||3942||Workflow data||http://edamontology.org/data_2971
2053||3942||Threshold||http://edamontology.org/data_2146
2055||3775||Peptide property||http://edamontology.org/data_2979
2056||1964||Reaction data||http://edamontology.org/data_2978
2057||7||Organism name||http://edamontology.org/data_2909
2058||189||Genome visualisation||http://edamontology.org/operation_3208
2059||3168||Genome comparison||http://edamontology.org/operation_3209
2060||2063||Methylation level analysis (global)||http://edamontology.org/operation_3206
2061||2063||Methylation level analysis (gene-specific)||http://edamontology.org/operation_3207
2062||2592||Methylation analysis||http://edamontology.org/operation_3204
2063||1205||Methylation calling||http://edamontology.org/operation_3205
2064||1750||Mutation detection||http://edamontology.org/operation_3202
2065||3192||Genome accession||http://edamontology.org/data_2903
2067||2114||Map accession||http://edamontology.org/data_2904
2066||3476||Chromatogram visualisation||http://edamontology.org/operation_3203
2068||1521||Molecule accession||http://edamontology.org/data_2901
2069||2592||DNA barcoding||http://edamontology.org/operation_3200
2071||3957||SNP calling||http://edamontology.org/operation_3201
2070||62||Data resource definition accession||http://edamontology.org/data_2902
2072||1514||Protein accession||http://edamontology.org/data_2907
2073||7||Organism accession||http://edamontology.org/data_2908
2074||2068||Lipid accession||http://edamontology.org/data_2905
2075||1511||Peptide ID||http://edamontology.org/data_2906
2076||1591||Gap penalty||http://edamontology.org/data_2137
2077||3942||Sequence width||http://edamontology.org/data_2136
2078||3942||Toggle||http://edamontology.org/data_2135
2079||3942||Results sort order||http://edamontology.org/data_2134
2080||573||Carbohydrate accession||http://edamontology.org/data_2900
2081||1936||Nucleic acid melting temperature||http://edamontology.org/data_2139
2082||3745||Logical operator||http://edamontology.org/data_2133
2083||3942||Mutation type||http://edamontology.org/data_2132
2084||3745||Operating system name||http://edamontology.org/data_2131
2085||3942||KEGG LIGAND entry format||http://edamontology.org/format_1697
2087||3942||KEGG COMPOUND entry format||http://edamontology.org/format_1698
2086||3942||Sequence profile type||http://edamontology.org/data_2130
2088||2461||Read pre-processing||http://edamontology.org/operation_3219
2089||3942||KEGG PLANT entry format||http://edamontology.org/format_1699
2090||2100||Peak detection||http://edamontology.org/operation_3215
2091||3286||Scaffolding||http://edamontology.org/operation_3216
2092||2091||Scaffold gap completion||http://edamontology.org/operation_3217
2093||2461||Sequencing quality control||http://edamontology.org/operation_3218
2095||1023||Strain accession||http://edamontology.org/data_2912
2094||3084||Genome indexing||http://edamontology.org/operation_3211
2096||7||Virus identifier||http://edamontology.org/data_2913
2097||2094||Genome indexing (Burrows-Wheeler)||http://edamontology.org/operation_3212
2099||433||Sequence features metadata||http://edamontology.org/data_2914
2098||2094||Genome indexing (suffix arrays)||http://edamontology.org/operation_3213
2100||1206||Spectral analysis||http://edamontology.org/operation_3214
2101||206||Gramene identifier||http://edamontology.org/data_2915
2102||622||DDBJ accession||http://edamontology.org/data_2916
2103||2122||ConsensusPathDB identifier||http://edamontology.org/data_2917
2104||392||Translation frame specification||http://edamontology.org/data_2126
2105||2106||Genetic code name||http://edamontology.org/data_2128
2106||1605||Genetic code identifier||http://edamontology.org/data_2127
2107||32||Transcription factor accession||http://edamontology.org/data_2911
2108||34||Protein family accession||http://edamontology.org/data_2910
2109||413||File format name||http://edamontology.org/data_2129
2110||3942||Codon usage||http://edamontology.org/data_2927
2111||3942||Sequence data||http://edamontology.org/data_2925
2112||1521||Nucleic acid identifier||http://edamontology.org/data_2119
2113||1605||Person identifier||http://edamontology.org/data_2118
2114||1605||Map identifier||http://edamontology.org/data_2117
2115||3942||Nucleic acid features (codon)||http://edamontology.org/data_2116
2116||2072||WormBase wormpep ID||http://edamontology.org/data_2114
2117||2122||WormBase identifier||http://edamontology.org/data_2113
2118||49||FlyBase primary identifier||http://edamontology.org/data_2112
2119||1605||Codon usage table ID||http://edamontology.org/data_2111
2120||1605||Molecular property identifier||http://edamontology.org/data_2110
2121||3942||Gap separation penalty (float)||http://edamontology.org/data_1409
2123||3942||Gap separation penalty (integer)||http://edamontology.org/data_1408
2122||2833||Identifier (hybrid)||http://edamontology.org/data_2109
2124||3942||Gap extension penalty (float)||http://edamontology.org/data_1407
2125||3942||Gap extension penalty (integer)||http://edamontology.org/data_1406
2126||3942||Gap opening penalty (float)||http://edamontology.org/data_1405
2128||1591||Drop off score||http://edamontology.org/data_1403
2127||2131||Reaction ID (BioCyc)||http://edamontology.org/data_2106
2130||3942||Gap opening penalty (integer)||http://edamontology.org/data_1404
2129||2138||Compound ID (BioCyc)||http://edamontology.org/data_2105
2132||1591||Match reward score||http://edamontology.org/data_1401
2131||1605||Reaction ID||http://edamontology.org/data_2108
2134||981||Enzyme ID (BioCyc)||http://edamontology.org/data_2107
2133||1591||Mismatch penalty score||http://edamontology.org/data_1402
2135||713||KEGG organism code||http://edamontology.org/data_2102
2136||3942||Terminal gap penalty||http://edamontology.org/data_1400
2137||2113||User ID||http://edamontology.org/data_2101
2138||2122||BioCyc ID||http://edamontology.org/data_2104
2139||3942||Gene name (KEGG GENES)||http://edamontology.org/data_2103
2140||3942||Type||http://edamontology.org/data_2100
2141||3942||Sequence alignment report (site correlation)||http://edamontology.org/data_1416
2142||3942||Sequence-profile alignment (Domainatrix signature)||http://edamontology.org/data_1417
2143||3942||Sequence-profile alignment (HMM)||http://edamontology.org/data_1418
2144||1585||Terminal gap extension penalty||http://edamontology.org/data_1411
2145||1583||Terminal gap opening penalty||http://edamontology.org/data_1410
2146||2725||Sequence similarity||http://edamontology.org/data_1413
2147||2725||Sequence identity||http://edamontology.org/data_1412
2148||3942||Sequence alignment report (site conservation)||http://edamontology.org/data_1415
2149||3942||Sequence alignment metadata (quality report)||http://edamontology.org/data_1414
2150||419||Phylogenetic invariants||http://edamontology.org/data_1429
2151||2688||Phylogenetic discrete data||http://edamontology.org/data_1427
2152||419||Phylogenetic character cliques||http://edamontology.org/data_1428
2153||3942||Sequence-profile alignment (fingerprint)||http://edamontology.org/data_1420
2154||2688||Phylogenetic continuous quantitative data||http://edamontology.org/data_1426
2155||3942||Phylogenetic report||http://edamontology.org/data_1438
2156||1669||DNA substitution model||http://edamontology.org/data_1439
2157||2671||Comparison matrix (amino acid)||http://edamontology.org/data_1449
2158||3942||Phylogenetic tree report (tree shape)||http://edamontology.org/data_1440
2159||2671||Comparison matrix (nucleotide)||http://edamontology.org/data_1448
2160||3942||Comparison matrix (floats)||http://edamontology.org/data_1447
2161||3942||Comparison matrix (integers)||http://edamontology.org/data_1446
2162||419||Phylogenetic character contrasts||http://edamontology.org/data_1444
2163||3942||Phylogenetic tree report (tree stratigraphic)||http://edamontology.org/data_1443
2164||419||Phylogenetic tree distances||http://edamontology.org/data_1442
2165||3942||Phylogenetic tree report (tree evaluation)||http://edamontology.org/data_1441
2166||2176||Protein chain||http://edamontology.org/data_1467
2167||2176||Protein domain||http://edamontology.org/data_1468
2168||3942||Protein structure (all atoms)||http://edamontology.org/data_1469
2169||137||Protein domain classification format||http://edamontology.org/format_3097
2170||3117||Small molecule structure||http://edamontology.org/data_1463
2172||2169||Raw SCOP domain classification format||http://edamontology.org/format_3098
2171||2187||DNA structure||http://edamontology.org/data_1464
2173||2187||RNA structure||http://edamontology.org/data_1465
2174||2173||tRNA structure||http://edamontology.org/data_1466
2175||838||ArrayVision||http://www.ebi.ac.uk/efo/swo/SWO_0000042
2177||838|| ArrayTools ||http://www.ebi.ac.uk/efo/swo/SWO_0000041
2176||3117||Protein structure||http://edamontology.org/data_1460
2178||2169||Raw CATH domain classification format||http://edamontology.org/format_3099
2179||2175||ArrayVision 6.0 (Imaging Research Inc.)||http://www.ebi.ac.uk/efo/swo/SWO_0000044
2180||2176||Protein-ligand complex||http://edamontology.org/data_1461
2181||3117||Carbohydrate structure||http://edamontology.org/data_1462
2182||838||ArrayNorm||http://www.ebi.ac.uk/efo/swo/SWO_0000040
2183||838||ArrayGauge||http://www.ebi.ac.uk/efo/swo/SWO_0000039
2184||838||Agilent Technologies Software||http://www.ebi.ac.uk/efo/swo/SWO_0000034
2185||838|| AnnotationDbi ||http://www.ebi.ac.uk/efo/swo/SWO_0000035
2186||838||Applied Biosystems 1700 Expression Array System Software||http://www.ebi.ac.uk/efo/swo/SWO_0000037
2187||3117||Nucleic acid structure||http://edamontology.org/data_1459
2188||3942||Protein features report (membrane regions)||http://edamontology.org/data_1456
2189||3942||Amino acid comparison matrix (integers)||http://edamontology.org/data_1452
2190||3942||Amino acid comparison matrix (floats)||http://edamontology.org/data_1453
2192||4017||Iterative Bayesian Model Averaging (BMA)||http://www.ebi.ac.uk/efo/swo/SWO_0000055
2191||3942||Nucleotide comparison matrix (integers)||http://edamontology.org/data_1450
2194||838||BLAST||http://www.ebi.ac.uk/efo/swo/SWO_0000054
2193||3942||Nucleotide comparison matrix (floats)||http://edamontology.org/data_1451
2195||838|| BGmix ||http://www.ebi.ac.uk/efo/swo/SWO_0000053
2196||4017||BGL||http://www.ebi.ac.uk/efo/swo/SWO_0000052
2197||3942||obsolete_BED format||http://www.ebi.ac.uk/efo/swo/SWO_0000051
2198||838|| BCRANK ||http://www.ebi.ac.uk/efo/swo/SWO_0000050
2199||4017||Binning clustering method||http://www.ebi.ac.uk/efo/swo/SWO_0000049
2200||2666||Axon GenePix Pro 3||http://www.ebi.ac.uk/efo/swo/SWO_0000047
2201||838||BAC||http://www.ebi.ac.uk/efo/swo/SWO_0000048
2202||2175||Array_vision_(Interfocus)||http://www.ebi.ac.uk/efo/swo/SWO_0000045
2203||838||AtlasImage||http://www.ebi.ac.uk/efo/swo/SWO_0000046
2204||3569||ID retrieval||http://edamontology.org/operation_3289
2205||3942||Structure alignment (protein all atoms)||http://edamontology.org/data_1485
2206||2407||Anonymisation||http://edamontology.org/operation_3283
2208||3942||Structure alignment (protein C-alpha atoms)||http://edamontology.org/data_1486
2207||2453||ID mapping||http://edamontology.org/operation_3282
2209||3942||Pairwise protein tertiary structure alignment (all atoms)||http://edamontology.org/data_1487
2210||2456||Named entity recognition||http://edamontology.org/operation_3280
2211||3942||Pairwise protein tertiary structure alignment (C-alpha atoms)||http://edamontology.org/data_1488
2212||3942||Multiple protein tertiary structure alignment (all atoms)||http://edamontology.org/data_1489
2213||838||BZScan||http://www.ebi.ac.uk/efo/swo/SWO_0000060
2214||4017||BaldiLongT||http://www.ebi.ac.uk/efo/swo/SWO_0000062
2215||3942||Structure alignment (multiple)||http://edamontology.org/data_1480
2216||4017||Bayesian Model||http://www.ebi.ac.uk/efo/swo/SWO_0000064
2217||473||Structure alignment (protein)||http://edamontology.org/data_1481
2219||838||BasReader 3.01||http://www.ebi.ac.uk/efo/swo/SWO_0000063
2218||3120||Structure alignment (nucleic acid)||http://edamontology.org/data_1482
2220||838|| BicARE ||http://www.ebi.ac.uk/efo/swo/SWO_0000066
2221||2217||Structure alignment (protein pair)||http://edamontology.org/data_1483
2222||3942||Multiple protein tertiary structure alignment||http://edamontology.org/data_1484
2223||838||Beadstudio||http://www.ebi.ac.uk/efo/swo/SWO_0000065
2224||4017||Base-Pair-Distance Kernel||http://www.ebi.ac.uk/efo/swo/SWO_0000056
2225||176||BPMAP||http://www.ebi.ac.uk/efo/swo/SWO_0000057
2226||838||BRB-ArrayTools||http://www.ebi.ac.uk/efo/swo/SWO_0000058
2227||838|| BSgenome ||http://www.ebi.ac.uk/efo/swo/SWO_0000059
2229||4024||Topic||http://edamontology.org/topic_0003
2228||3293||Document clustering||http://edamontology.org/operation_3279
2230||3293||Document similarity calculation||http://edamontology.org/operation_3278
2231||3942||Protein domain (C-alpha atoms)||http://edamontology.org/data_1474
2232||3120||Structure alignment (pair)||http://edamontology.org/data_1479
2233||838||BioConductor Software||http://www.ebi.ac.uk/efo/swo/SWO_0000072
2234||838|| BiocCaseStudies ||http://www.ebi.ac.uk/efo/swo/SWO_0000071
2235||838|| Biobase ||http://www.ebi.ac.uk/efo/swo/SWO_0000070
2236||3942||Protein chain (C-alpha atoms)||http://edamontology.org/data_1472
2237||838|| BufferedMatrix ||http://www.ebi.ac.uk/efo/swo/SWO_0000077
2239||838||BlueFuse||http://www.ebi.ac.uk/efo/swo/SWO_0000076
2238||3942||Protein domain (all atoms)||http://edamontology.org/data_1473
2240||838|| Biostrings ||http://www.ebi.ac.uk/efo/swo/SWO_0000075
2241||2176||C-alpha trace||http://edamontology.org/data_1470
2242||3942||Protein chain (all atoms)||http://edamontology.org/data_1471
2243||838|| BioMVCClass ||http://www.ebi.ac.uk/efo/swo/SWO_0000068
2244||3300||Sequence coordinate conversion||http://edamontology.org/operation_3267
2245||3942||Transcriptome assembly (mapping)||http://edamontology.org/operation_3260
2246||3540||Transcriptome assembly||http://edamontology.org/operation_3258
2247||3942||Transcriptome assembly (de novo)||http://edamontology.org/operation_3259
2248||4017||Average log expression across arrays (ALE)||http://www.ebi.ac.uk/efo/swo/SWO_0000010
2249||3942||DaliLite hit table||http://edamontology.org/data_1495
2250||1964||ALL/AML data set||http://www.ebi.ac.uk/efo/swo/SWO_0000011
2251||3768||Structural transformation matrix||http://edamontology.org/data_1494
2252||2218||Structure alignment (RNA)||http://edamontology.org/data_1493
2253||3942||Multiple nucleic acid tertiary structure alignment||http://edamontology.org/data_1492
2254||2218||Structure alignment (nucleic acid pair)||http://edamontology.org/data_1491
2255||3942||Multiple protein tertiary structure alignment (C-alpha atoms)||http://edamontology.org/data_1490
2256||3089||3D-1D scoring matrix||http://edamontology.org/data_1499
2257||3107||Tanimoto similarity score||http://edamontology.org/data_1498
2258||3107||Root-mean-square deviation||http://edamontology.org/data_1497
2259||3942||Molecular similarity score||http://edamontology.org/data_1496
2260||838||AIDA||http://www.ebi.ac.uk/efo/swo/SWO_0000009
2261||838||Affymetrix Expression Console||http://www.ebi.ac.uk/efo/swo/SWO_0000008
2262||838||Algorithms for Calculating Microarray Enrichment||http://www.ebi.ac.uk/efo/swo/SWO_0000007
2263||4017|| ACME ||http://www.ebi.ac.uk/efo/swo/SWO_0000006
2264||838||ABarray||http://www.ebi.ac.uk/efo/swo/SWO_0000005
2265||838||50-50 MANOVA||http://www.ebi.ac.uk/efo/swo/SWO_0000004
2266||4017||2-sample pooled t-test||http://www.ebi.ac.uk/efo/swo/SWO_0000003
2267||1396||Absolute Expression Analysis||http://www.ebi.ac.uk/efo/swo/SWO_0000020
2268||838|| AffyCompatible ||http://www.ebi.ac.uk/efo/swo/SWO_0000021
2269||838|| AffyExpress ||http://www.ebi.ac.uk/efo/swo/SWO_0000022
2270||1325||data construction algorithm||http://kt.ijs.si/panovp/OntoDM#OntoDM-KDD_806059
2271||2592||Copy number estimation||http://edamontology.org/operation_3233
2272||2715||Gene expression QTL analysis||http://edamontology.org/operation_3232
2273||2592||Read depth analysis||http://edamontology.org/operation_3230
2274||4017||ANCOVA||http://www.ebi.ac.uk/efo/swo/SWO_0000013
2275||4017||AMDIS||http://www.ebi.ac.uk/efo/swo/SWO_0000012
2276||1964||AP-MS data||http://www.ebi.ac.uk/efo/swo/SWO_0000015
2277||4017|| ANOVA ||http://www.ebi.ac.uk/efo/swo/SWO_0000014
2278||181||ARR||http://www.ebi.ac.uk/efo/swo/SWO_0000017
2279||4017||ARACNE algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000016
2280||1425||Absolute Expression Analysis||http://www.ebi.ac.uk/efo/swo/SWO_0000019
2282||4017||AWS algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000018
2281||3394||Primer removal||http://edamontology.org/operation_3237
2283||838||Agilent Scan Control||http://www.ebi.ac.uk/efo/swo/SWO_0000032
2284||2911||Agilent Feature Extraction software version 7.5||http://www.ebi.ac.uk/efo/swo/SWO_0000030
2285||2911||Agilent Feature Extraction software version A.5.1.1||http://www.ebi.ac.uk/efo/swo/SWO_0000031
2286||3549||Differential expression analysis||http://edamontology.org/operation_3223
2287||3296||Peak calling||http://edamontology.org/operation_3222
2288||1105||Variant classification||http://edamontology.org/operation_3225
2289||2715||Gene set testing||http://edamontology.org/operation_3224
2290||2592||Species frequency estimation||http://edamontology.org/operation_3221
2291||838||Affymetrix Software||http://www.ebi.ac.uk/efo/swo/SWO_0000026
2292||838||Affymetrix GeneChip Operating Software||http://www.ebi.ac.uk/efo/swo/SWO_0000025
2293||2292||Affymetrix GCOS v1.2||http://www.ebi.ac.uk/efo/swo/SWO_0000024
2294||1750||Variant calling||http://edamontology.org/operation_3227
2296||1750||Variant prioritization||http://edamontology.org/operation_3226
2295||2911||Agilent Feature Extraction software version 7.1||http://www.ebi.ac.uk/efo/swo/SWO_0000029
2297||2592||Exome analysis||http://edamontology.org/operation_3229
2298||2911||Agilent Feature Extraction 5.1.1||http://www.ebi.ac.uk/efo/swo/SWO_0000028
2299||838||Agi4x44PreProcess||http://www.ebi.ac.uk/efo/swo/SWO_0000027
2300||1750||Structural variation discovery||http://edamontology.org/operation_3228
2301||176||2bit||http://edamontology.org/format_3009
2302||177||MAF||http://edamontology.org/format_3008
2303||3087||Metabolites||http://edamontology.org/topic_0079
2304||268||Proteins||http://edamontology.org/topic_0078
2305||268||Nucleic acids||http://edamontology.org/topic_0077
2306||176||.nib||http://edamontology.org/format_3010
2307||177||genePred||http://edamontology.org/format_3011
2308||177||pgSnp||http://edamontology.org/format_3012
2309||177||axt||http://edamontology.org/format_3013
2310||177||LAV||http://edamontology.org/format_3014
2311||177||Pileup||http://edamontology.org/format_3015
2312||177||VCF||http://edamontology.org/format_3016
2313||176||SRF||http://edamontology.org/format_3017
2314||176||ZTR||http://edamontology.org/format_3018
2315||2445||GVF||http://edamontology.org/format_3019
2316||176||BCF||http://edamontology.org/format_3020
2317||2336||Nucleic acid structure analysis||http://edamontology.org/topic_0097
2318||3942||Nucleic acid thermodynamics||http://edamontology.org/topic_0094
2319||2305||RNA||http://edamontology.org/topic_0099
2320||2990||Data visualisation||http://edamontology.org/topic_0092
2321||1778||Bioinformatics||http://edamontology.org/topic_0091
2322||2990||Data search, query and retrieval||http://edamontology.org/topic_0090
2323||262||Phylogeny||http://edamontology.org/topic_0084
2324||3942||Alignment||http://edamontology.org/topic_0083
2325||526||Functional genomics||http://edamontology.org/topic_0085
2326||2990||Ontology and terminology||http://edamontology.org/topic_0089
2327||176||bigWig||http://edamontology.org/format_3006
2328||177||PSL||http://edamontology.org/format_3007
2329||176||bigBed||http://edamontology.org/format_3004
2330||177||WIG||http://edamontology.org/format_3005
2331||1761||Sequence analysis||http://edamontology.org/topic_0080
2332||177||BED format||http://edamontology.org/format_3003
2333||176||AB1||http://edamontology.org/format_3000
2334||2336||Structure prediction||http://edamontology.org/topic_0082
2335||177||ACE||http://edamontology.org/format_3001
2336||1761||Structure analysis||http://edamontology.org/topic_0081
2337||1353||DNA mutation||http://edamontology.org/topic_2533
2338||137||Matrix format||http://edamontology.org/format_3033
2339||3942||KEGG GLYCAN entry format||http://edamontology.org/format_1700
2340||3942||PubChem entry format||http://edamontology.org/format_1701
2341||3942||ChemSpider entry format||http://edamontology.org/format_1702
2342||3942||ChEBI entry format||http://edamontology.org/format_1703
2343||3942||MSDchem ligand dictionary entry format||http://edamontology.org/format_1704
2344||177||HET group dictionary entry format||http://edamontology.org/format_1705
2345||3942||KEGG DRUG entry format||http://edamontology.org/format_1706
2346||0||Thing||http://www.w3.org/2002/07/owl#Thing
2347||1145||pattern discovery algorithm||http://www.ebi.ac.uk/swo/algorithm/OntoDM_175260
2348||3942||PDB atom record format||http://edamontology.org/format_1747
2349||3942||CATH PDB report format||http://edamontology.org/format_1761
2350||3942||CATH chain report format||http://edamontology.org/format_1760
2351||177||iHOP text mining abstract format||http://edamontology.org/format_1740
2352||177||Oscar3||http://edamontology.org/format_1741
2353||177||Medline Display Format||http://edamontology.org/format_1735
2354||177||PubMed citation||http://edamontology.org/format_1734
2355||177||CiteXplore-all||http://edamontology.org/format_1737
2356||177||CiteXplore-core||http://edamontology.org/format_1736
2357||177||pmc||http://edamontology.org/format_1739
2358||2359||Attribution clause||http://www.ebi.ac.uk/swo/SWO_9000006
2359||4024||license clause||http://www.ebi.ac.uk/swo/SWO_9000005
2360||2359||Platform clause||http://www.ebi.ac.uk/swo/SWO_9000009
2361||2359||Derivatives clause||http://www.ebi.ac.uk/swo/SWO_9000007
2362||2359||Source code clause||http://www.ebi.ac.uk/swo/SWO_9000008
2363||2359||Number of users clause||http://www.ebi.ac.uk/swo/SWO_9000011
2364||2359||Number of installations clause||http://www.ebi.ac.uk/swo/SWO_9000010
2365||2359||Usage clause||http://www.ebi.ac.uk/swo/SWO_9000013
2366||2359||Time clause||http://www.ebi.ac.uk/swo/SWO_9000012
2367||1296||Restrictions on derivative software||http://www.ebi.ac.uk/swo/SWO_9000017
2368||1296||No restrictions on derivatives||http://www.ebi.ac.uk/swo/SWO_9000016
2369||2361||derivative software not allowed||http://www.ebi.ac.uk/swo/SWO_9000018
2370||2367||derivative code same license||http://www.ebi.ac.uk/swo/SWO_9000019
2371||313||Gene name||http://edamontology.org/data_2299
2372||2366||Time for use restricted||http://www.ebi.ac.uk/swo/SWO_9000028
2373||2363||Number of users unrestricted||http://www.ebi.ac.uk/swo/SWO_9000027
2374||2363||Number of users restricted||http://www.ebi.ac.uk/swo/SWO_9000026
2375||2364||Number of installations unrestricted||http://www.ebi.ac.uk/swo/SWO_9000025
2376||2364||Number of installations restricted||http://www.ebi.ac.uk/swo/SWO_9000024
2377||2360||Platform unrestricted||http://www.ebi.ac.uk/swo/SWO_9000023
2378||2360||Platform restricted||http://www.ebi.ac.uk/swo/SWO_9000022
2379||2362||Source code unavailable||http://www.ebi.ac.uk/swo/SWO_9000021
2381||2025||UniProt ID||http://edamontology.org/data_2291
2380||2362||Source code available||http://www.ebi.ac.uk/swo/SWO_9000020
2382||622||GenBank accession||http://edamontology.org/data_2292
2383||2101||Gramene secondary identifier||http://edamontology.org/data_2293
2384||1605||Sequence variation ID||http://edamontology.org/data_2294
2386||190||Gene ID||http://edamontology.org/data_2295
2385||2169||CATH domain report format||http://edamontology.org/format_3100
2387||3942||Gene name (AceView)||http://edamontology.org/data_2296
2388||3790||Gene ID (ECK)||http://edamontology.org/data_2297
2389||2386||Gene ID (HGNC)||http://edamontology.org/data_2298
2390||2366||Time for use unrestricted||http://www.ebi.ac.uk/swo/SWO_9000029
2391||3942||Annotation processing||http://edamontology.org/operation_2407
2392||3942||Sequence feature analysis||http://edamontology.org/operation_2408
2394||3942||Protein interaction data processing||http://edamontology.org/operation_2405
2393||3942||Sequence identifier (protein)||http://edamontology.org/data_2288
2396||3942||Sequence identifier (nucleic acid)||http://edamontology.org/data_2289
2395||2576||Protein structure analysis||http://edamontology.org/operation_2406
2398||2402||usage academic only||http://www.ebi.ac.uk/swo/SWO_9000033
2397||2449||Sequence analysis||http://edamontology.org/operation_2403
2400||3942||Sequence motif processing||http://edamontology.org/operation_2404
2399||2402||usage non commercial only||http://www.ebi.ac.uk/swo/SWO_9000032
2401||2367||derivative code linked same license||http://www.ebi.ac.uk/swo/SWO_9000034
2403||3942||NCBI gene report format||http://edamontology.org/format_1782
2402||2365||Usage restricted||http://www.ebi.ac.uk/swo/SWO_9000031
2404||2365||Usage unrestricted||http://www.ebi.ac.uk/swo/SWO_9000030
2405||2386||Gene ID (MIPS)||http://edamontology.org/data_2285
2406||622||EMBL accession||http://edamontology.org/data_2290
2407||839||Utility operation||http://edamontology.org/operation_2409
2408||3942||Protein domain classification||http://edamontology.org/data_0900
2409||3091||Peptide molecular weights||http://edamontology.org/data_1519
2410||3942||Protein features report (domains)||http://edamontology.org/data_0901
2411||3502||Sequence annotation track format||http://edamontology.org/format_2919
2412||3942||Protein architecture report||http://edamontology.org/data_0902
2413||3942||Protein folding report||http://edamontology.org/data_0903
2414||3942||Protein features (mutation)||http://edamontology.org/data_0904
2415||373||Protein interaction raw data||http://edamontology.org/data_0905
2416||3942||Restriction enzyme report||http://edamontology.org/data_1517
2417||3096||Protein interaction report||http://edamontology.org/data_0906
2418||3096||Protein family report||http://edamontology.org/data_0907
2419||3638||Vmax||http://edamontology.org/data_0909
2420||3942||Structural profile processing||http://edamontology.org/operation_2411
2421||3942||Gene expression analysis||http://edamontology.org/operation_2410
2422||2458||Protein folding analysis||http://edamontology.org/operation_2415
2423||3173||Protein function analysis||http://edamontology.org/operation_2414
2424||3942||Sequence profile processing||http://edamontology.org/operation_2413
2425||3942||Data index processing||http://edamontology.org/operation_2412
2426||3942||Raw CATH domain classification||http://edamontology.org/data_2236
2427||1224||Primer and probe design||http://edamontology.org/operation_2419
2428||3942||Raw SCOP domain classification||http://edamontology.org/data_2235
2429||3942||Physicochemical property data processing||http://edamontology.org/operation_2417
2430||3173||Protein secondary structure analysis||http://edamontology.org/operation_2416
2431||3775||Nucleic acid property||http://edamontology.org/data_0912
2432||3638||Km||http://edamontology.org/data_0910
2433||3942||Nucleotide base annotation||http://edamontology.org/data_0911
2434||1079||Gene report||http://edamontology.org/data_0916
2435||3091||Protein pKa value||http://edamontology.org/data_1529
2436||3942||Gene classification||http://edamontology.org/data_0917
2437||3091||Protein isoelectric point||http://edamontology.org/data_1528
2439||1964||Codon usage data||http://edamontology.org/data_0914
2438||3091||Protein titration curve||http://edamontology.org/data_1527
2440||2052||Protein globularity||http://edamontology.org/data_1526
2441||177||markx0 variant||http://edamontology.org/format_2922
2442||177||mega variant||http://edamontology.org/format_2923
2443||3942||DNA variation||http://edamontology.org/data_0918
2444||3503||Alignment format (pair only)||http://edamontology.org/format_2920
2445||137||Sequence variation annotation format||http://edamontology.org/format_2921
2446||3763||Chromosome report||http://edamontology.org/data_0919
2447||177||Phylip format variant||http://edamontology.org/format_2924
2448||649||Sequence cluster ID (SYSTERS)||http://edamontology.org/data_2220
2449||839||Operation (typed)||http://edamontology.org/operation_2420
2450||4024||software interface||http://www.ebi.ac.uk/swo/SWO_9000050
2451||3098||Data retrieval||http://edamontology.org/operation_2422
2452||3098||Database search||http://edamontology.org/operation_2421
2453||1206||Comparison||http://edamontology.org/operation_2424
2454||2052||Protein solubility||http://edamontology.org/data_1524
2456||1206||Prediction and recognition||http://edamontology.org/operation_2423
2455||2052||Protein crystallizability||http://edamontology.org/data_1525
2458||1206||Modelling and simulation||http://edamontology.org/operation_2426
2457||2052||Protein sequence hydropathy plot||http://edamontology.org/data_1522
2459||1206||Optimisation and refinement||http://edamontology.org/operation_2425
2460||3091||Protein charge plot||http://edamontology.org/data_1523
2461||1206||Validation||http://edamontology.org/operation_2428
2462||989||Ontology metadata||http://edamontology.org/data_2223
2463||2052||Peptide hydrophobic moment||http://edamontology.org/data_1520
2465||3942||Data handling||http://edamontology.org/operation_2427
2464||2052||Protein aliphatic index||http://edamontology.org/data_1521
2466||1206||Mapping||http://edamontology.org/operation_2429
2469||3942||Sequence-profile alignment (HMM) format||http://edamontology.org/format_2015
2468||2865||Codon usage table processing||http://edamontology.org/operation_2433
2467||3942||XML Schema||http://edamontology.org/data_2250
2471||3942||Microarray data processing||http://edamontology.org/operation_2432
2470||137||Sequence-profile alignment format||http://edamontology.org/format_2014
2472||2338||Amino acid index format||http://edamontology.org/format_2017
2473||1206||Design||http://edamontology.org/operation_2430
2474||2109||OBO file format name||http://edamontology.org/data_2254
2475||62||Data resource definition name||http://edamontology.org/data_2253
2477||3942||XSLT stylesheet||http://edamontology.org/data_2252
2476||137||Biological pathway or network format||http://edamontology.org/format_2013
2478||3942||Relax-NG schema||http://edamontology.org/data_2251
2479||2646||RNA secondary structure analysis||http://edamontology.org/operation_2439
2480||2449||Pathway or network processing||http://edamontology.org/operation_2438
2481||1442||Gene regulatory network prediction||http://edamontology.org/operation_2437
2482||3799||Functional enrichment||http://edamontology.org/operation_2436
2483||3942||Gene expression profile processing||http://edamontology.org/operation_2435
2484||3942||Data retrieval (codon usage table)||http://edamontology.org/operation_2434
2485||2523||Amino acid index (White-Wimley data)||http://edamontology.org/data_1507
2486||2523||Amino acid index (hydropathy)||http://edamontology.org/data_1506
2487||2523||Amino acid index (molecular weight)||http://edamontology.org/data_1505
2488||3942||Enzyme report||http://edamontology.org/data_1509
2489||2523||Amino acid index (van der Waals radii)||http://edamontology.org/data_1508
2491||3966||DNA structure prediction||http://edamontology.org/operation_2442
2492||137||Phylogenetic tree format||http://edamontology.org/format_2006
2490||2498||Windows XP||http://www.ebi.ac.uk/swo/SWO_9000074
2495||3966||RNA structure prediction||http://edamontology.org/operation_2441
2493||177||TreeCon-seq||http://edamontology.org/format_2005
2494||838||Microsoft Office 2001||http://www.ebi.ac.uk/swo/SWO_9000075
2496||3942||Protein secondary structure processing||http://edamontology.org/operation_2444
2498||838||Microsoft Windows||http://www.ebi.ac.uk/swo/SWO_9000072
2497||177||T-Coffee format||http://edamontology.org/format_2004
2499||177||srspair||http://edamontology.org/format_2003
2500||2449||Phylogenetic tree processing||http://edamontology.org/operation_2443
2501||2498||Windows Vista||http://www.ebi.ac.uk/swo/SWO_9000073
2502||838||Microsoft Excel||http://www.ebi.ac.uk/swo/SWO_9000070
2503||177||srs format||http://edamontology.org/format_2002
2504||3942||Heterogen annotation||http://edamontology.org/data_2240
2505||177||EMBOSS simple format||http://edamontology.org/format_2001
2506||2502||Microsoft Excel for Windows 2010||http://www.ebi.ac.uk/swo/SWO_9000071
2508||3942||Structure processing (RNA)||http://edamontology.org/operation_2440
2507||177||selex||http://edamontology.org/format_2000
2509||3942||Phylogenetic property values||http://edamontology.org/data_2242
2510||3942||Sequence set (bootstrapped)||http://edamontology.org/data_2245
2511||3942||Phylogenetic consensus tree||http://edamontology.org/data_2247
2514||3942||Sequence processing||http://edamontology.org/operation_2446
2513||3942||DTD||http://edamontology.org/data_2249
2515||838||Annotare||http://www.ebi.ac.uk/swo/SWO_9000078
2512||2523||Amino acid index (chemical classes)||http://edamontology.org/data_1502
2519||3942||Protein interaction network processing||http://edamontology.org/operation_2445
2518||3942||Schema||http://edamontology.org/data_2248
2516||838||BioJava||http://www.ebi.ac.uk/swo/SWO_9000079
2517||3877||Amino acid pair-wise contact potentials||http://edamontology.org/data_1503
2520||838||software suite||http://www.ebi.ac.uk/swo/SWO_9000076
2521||3942||Sequence processing (nucleic acid)||http://edamontology.org/operation_2448
2522||3942||Sequence processing (protein)||http://edamontology.org/operation_2447
2524||838||Adobe Acrobat Reader||http://www.ebi.ac.uk/swo/SWO_9000077
2523||3768||Amino acid index||http://edamontology.org/data_1501
2525||2810||CC BY-SA 2.0||http://www.ebi.ac.uk/swo/license/SWO_1000052
2526||3984||LPPL v1.3||http://www.ebi.ac.uk/swo/license/SWO_1000053
2527||3984||LPPL v1.2||http://www.ebi.ac.uk/swo/license/SWO_1000054
2528||3986||MPL v2.0||http://www.ebi.ac.uk/swo/license/SWO_1000055
2529||840||Artistic License||http://www.ebi.ac.uk/swo/license/SWO_1000056
2530||2529||Artistic License v2.0||http://www.ebi.ac.uk/swo/license/SWO_1000057
2531||2359||Purchase cost||http://www.ebi.ac.uk/swo/license/SWO_1000058
2532||2531||Free||http://www.ebi.ac.uk/swo/license/SWO_1000059
2533||3942||CATH homologous superfamily||http://edamontology.org/data_1559
2534||3942||CATH class||http://edamontology.org/data_1556
2536||3942||EMBASSY domain classification||http://edamontology.org/data_1555
2535||3942||Structure processing (protein)||http://edamontology.org/operation_2459
2538||1105||GPCR classification||http://edamontology.org/operation_2456
2537||3942||CATH topology||http://edamontology.org/data_1558
2539||1229||GPCR coupling selectivity prediction||http://edamontology.org/operation_2457
2540||838||DROID||http://www.ebi.ac.uk/swo/SWO_9000089
2541||3942||CATH architecture||http://edamontology.org/data_1557
2542||3942||SCOP node||http://edamontology.org/data_1554
2543||3942||CATH node||http://edamontology.org/data_1553
2544||2397||Sequence comparison||http://edamontology.org/operation_2451
2545||3942||Protein non-canonical interactions||http://edamontology.org/data_1550
2546||838||BioPerl||http://www.ebi.ac.uk/swo/SWO_9000081
2547||3296||Gene prediction||http://edamontology.org/operation_2454
2548||838||DNDC||http://www.ebi.ac.uk/swo/SWO_9000083
2549||3942||Sequence cluster processing||http://edamontology.org/operation_2452
2550||2358||Attribution required||http://www.ebi.ac.uk/swo/license/SWO_1000051
2551||3942||Feature table processing||http://edamontology.org/operation_2453
2552||2810||CC BY 2.0||http://www.ebi.ac.uk/swo/license/SWO_1000050
2553||3942||Data retrieval (protein annotation)||http://edamontology.org/operation_2467
2554||3942||Data retrieval (phylogenetic tree)||http://edamontology.org/operation_2468
2556||3942||Data retrieval (protein interaction annotation)||http://edamontology.org/operation_2469
2555||3942||Protein-nucleic acid interactions report||http://edamontology.org/data_1567
2557||2417||Protein-ligand interaction report||http://edamontology.org/data_1566
2558||3942||Protein-protein interaction report||http://edamontology.org/data_1565
2559||3942||Protein fold recognition report||http://edamontology.org/data_1564
2561||838||Endnote||http://www.ebi.ac.uk/swo/SWO_9000093
2560||3942||CATH functional category||http://edamontology.org/data_1561
2562||3942||CATH structurally similar group||http://edamontology.org/data_1560
2563||838||EMBOSS package||http://www.ebi.ac.uk/swo/SWO_9000092
2564||3358||Protein atom surface calculation||http://edamontology.org/operation_2460
2565||838||Eclipse||http://www.ebi.ac.uk/swo/SWO_9000091
2566||3358||Protein residue surface calculation||http://edamontology.org/operation_2461
2568||838||Dropbox||http://www.ebi.ac.uk/swo/SWO_9000090
2567||3358||Protein surface calculation||http://edamontology.org/operation_2462
2569||3942||Sequence alignment processing||http://edamontology.org/operation_2463
2571||840||free to use license||http://www.ebi.ac.uk/swo/license/SWO_1000061
2570||2712||Protein-protein interaction prediction||http://edamontology.org/operation_2464
2573||3942||Structure processing||http://edamontology.org/operation_2465
2572||2531||Not Free||http://www.ebi.ac.uk/swo/license/SWO_1000060
2574||3942||Map annotation||http://edamontology.org/operation_2466
2575||838||Grimoires||http://www.ebi.ac.uk/swo/SWO_9000094
2576||2449||Structure analysis||http://edamontology.org/operation_2480
2577||4017||CLR algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000089
2578||3096||Protein structure report||http://edamontology.org/data_1537
2579||2578||Protein structural quality report||http://edamontology.org/data_1539
2580||3745||Database field name||http://edamontology.org/data_2219
2581||3942||Mutation annotation (prevalence)||http://edamontology.org/data_2213
2582||3091||Protein hydrogen exchange rate||http://edamontology.org/data_1530
2583||3942||Mutation annotation (prognostic)||http://edamontology.org/data_2214
2584||3091||Protein optical density||http://edamontology.org/data_1532
2586||3942||Mutation annotation (basic)||http://edamontology.org/data_2212
2585||3091||Protein extinction coefficient||http://edamontology.org/data_1531
2588||3942||Tumor annotation||http://edamontology.org/data_2217
2587||3091||Peptide immunogenicity data||http://edamontology.org/data_1534
2590||3942||Protein subcellular localization||http://edamontology.org/data_1533
2589||3942||Server metadata||http://edamontology.org/data_2218
2594||838|| CMA ||http://www.ebi.ac.uk/efo/swo/SWO_0000090
2592||2397||Nucleic acid sequence analysis||http://edamontology.org/operation_2478
2593||3942||Mutation annotation (functional)||http://edamontology.org/data_2215
2591||3942||MHC peptide immunogenicity report||http://edamontology.org/data_1536
2595||4017||CMA||http://www.ebi.ac.uk/efo/swo/SWO_0000091
2596||298||Codon number||http://edamontology.org/data_2216
2597||2397||Protein sequence analysis||http://edamontology.org/operation_2479
2598||838|| CORREP ||http://www.ebi.ac.uk/efo/swo/SWO_0000092
2599||2456||Molecular dynamics simulation||http://edamontology.org/operation_2476
2601||4017||CRLMM algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000094
2600||2644||Protein architecture comparison||http://edamontology.org/operation_2474
2603||4017||Continuous Wavelet Transform (CWT)-based peak detection algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000095
2602||1103||Protein architecture recognition||http://edamontology.org/operation_2475
2604||3942||Data retrieval (gene annotation)||http://edamontology.org/operation_2472
2605||838||CARMAweb||http://www.ebi.ac.uk/efo/swo/SWO_0000096
2606||4017||Category analysis||http://www.ebi.ac.uk/efo/swo/SWO_0000097
2607||3942||Data retrieval (genotype and phenotype annotation)||http://edamontology.org/operation_2473
2609||3942||Data retrieval (protein family annotation)||http://edamontology.org/operation_2470
2608||838||Category||http://www.ebi.ac.uk/efo/swo/SWO_0000098
2611||3942||Data retrieval (RNA family annotation)||http://edamontology.org/operation_2471
2610||838|| ChemmineR ||http://www.ebi.ac.uk/efo/swo/SWO_0000099
2612||2813||GNU GPL v2||http://www.ebi.ac.uk/swo/license/SWO_1000047
2615||838|| CALIB ||http://www.ebi.ac.uk/efo/swo/SWO_0000079
2613||2370||Copyleft||http://www.ebi.ac.uk/swo/license/SWO_1000045
2614||2618||Hydrogen bond calculation (inter-residue)||http://edamontology.org/operation_2491
2618||1192||Residue contact calculation (residue-residue)||http://edamontology.org/operation_2490
2616||838|| BufferedMatrixMethods ||http://www.ebi.ac.uk/efo/swo/SWO_0000078
2617||2813||GNU GPL v3||http://www.ebi.ac.uk/swo/license/SWO_1000046
2619||840||GNU Project Free Software License Type||http://www.ebi.ac.uk/swo/license/SWO_1000043
2620||2619||GNU Copyleft Software License Type||http://www.ebi.ac.uk/swo/license/SWO_1000044
2621||416||Mutation ID||http://edamontology.org/data_2209
2622||2112||Plasmid identifier||http://edamontology.org/data_2208
2623||2630||Protein residue 3D cluster||http://edamontology.org/data_1548
2624||2630||Protein hydrogen bonds||http://edamontology.org/data_1549
2625||2810||CC0||http://www.ebi.ac.uk/swo/license/SWO_1000049
2626||3942||Protein surface report||http://edamontology.org/data_1543
2627||3942||Sequence record full||http://edamontology.org/data_2201
2628||2630||Protein solvent accessibility||http://edamontology.org/data_1542
2629||3942||Protein flexibility or motion report||http://edamontology.org/data_1541
2630||3091||Protein residue interactions||http://edamontology.org/data_1540
2632||492||Protein subcellular localization prediction||http://edamontology.org/operation_2489
2631||2630||Protein contact map||http://edamontology.org/data_1547
2633||838|| CAMERA ||http://www.ebi.ac.uk/efo/swo/SWO_0000080
2634||2630||Protein distance matrix||http://edamontology.org/data_1546
2635||3091||Protein dipole moment||http://edamontology.org/data_1545
2636||1952||Ramachandran plot||http://edamontology.org/data_1544
2638||176||CDF binary format||http://www.ebi.ac.uk/efo/swo/SWO_0000083
2637||194||Helical wheel drawing||http://edamontology.org/operation_2485
2639||176||CEL binary format||http://www.ebi.ac.uk/efo/swo/SWO_0000084
2640||194||Topology diagram drawing||http://edamontology.org/operation_2486
2641||4017||CBS||http://www.ebi.ac.uk/efo/swo/SWO_0000081
2642||1108||Protein structure comparison||http://edamontology.org/operation_2487
2643||4017||CBS algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000082
2644||1108||Protein secondary structure comparison||http://edamontology.org/operation_2488
2645||838|| CGHregions ||http://www.ebi.ac.uk/efo/swo/SWO_0000087
2646||2576||Nucleic acid structure analysis||http://edamontology.org/operation_2481
2648||3942||Secondary structure processing||http://edamontology.org/operation_2482
2647||176||CHP binary format||http://www.ebi.ac.uk/efo/swo/SWO_0000088
2650||838|| CGHbase ||http://www.ebi.ac.uk/efo/swo/SWO_0000085
2649||2453||Structure comparison||http://edamontology.org/operation_2483
2651||838|| CGHcall ||http://www.ebi.ac.uk/efo/swo/SWO_0000086
2652||2817||GenePix||http://www.ebi.ac.uk/efo/swo/SWO_0000181
2653||137||Sequence profile format||http://edamontology.org/format_2069
2654||2817||GenePix 5.0.1||http://www.ebi.ac.uk/efo/swo/SWO_0000180
2655||2544||Sequence motif comparison||http://edamontology.org/operation_0240
2656||2657||GenePix Pro 3||http://www.ebi.ac.uk/efo/swo/SWO_0000183
2657||2817||GenePix Pro||http://www.ebi.ac.uk/efo/swo/SWO_0000182
2659||137||Database hits (sequence) format||http://edamontology.org/format_2066
2658||2657||GenePix Pro 6.0||http://www.ebi.ac.uk/efo/swo/SWO_0000185
2660||3296||Conserved transcription regulatory sequence identification||http://edamontology.org/operation_0242
2662||137||Protein structure report (quality evaluation) format||http://edamontology.org/format_2065
2661||2657||GenePix Pro 5.0||http://www.ebi.ac.uk/efo/swo/SWO_0000184
2663||3942||Transcription regulatory sequence analysis||http://edamontology.org/operation_0241
2665||137||Sequence motif format||http://edamontology.org/format_2068
2664||2599||Protein flexibility and motion analysis||http://edamontology.org/operation_0244
2666||2657||GenePix Pro [Axon Instruments]||http://www.ebi.ac.uk/efo/swo/SWO_0000187
2667||137||Sequence distance matrix format||http://edamontology.org/format_2067
2668||2395||Protein property calculation (from structure)||http://edamontology.org/operation_0243
2669||2666||GenePix Pro 6 [Axon Instruments]||http://www.ebi.ac.uk/efo/swo/SWO_0000186
2672||1218||Protein domain recognition||http://edamontology.org/operation_0246
2670||137||Protein report format||http://edamontology.org/format_2062
2671||3768||Comparison matrix||http://edamontology.org/data_0874
2673||1218||Protein structural motif recognition||http://edamontology.org/operation_0245
2674||137||Nucleic acid features (primers) format||http://edamontology.org/format_2061
2675||3942||Protein features report (secondary structure)||http://edamontology.org/data_0876
2676||1409||Protein folding, stability and design||http://edamontology.org/topic_0130
2678||2338||3D-1D scoring matrix format||http://edamontology.org/format_2064
2677||2668||Residue interaction calculation||http://edamontology.org/operation_0248
2681||3942||Protein topology||http://edamontology.org/data_0875
2679||2395||Protein architecture analysis||http://edamontology.org/operation_0247
2680||3942||Protein report (enzyme) format||http://edamontology.org/format_2063
2682||3628||Sequence distance matrix||http://edamontology.org/data_0870
2683||2668||Torsion angle calculation||http://edamontology.org/operation_0249
2686||137||Map format||http://edamontology.org/format_2060
2684||1964||Phylogenetic tree||http://edamontology.org/data_0872
2685||2805||Mass spectrometry||http://edamontology.org/topic_0134
2687||3942||Two-dimensional gel electrophoresis||http://edamontology.org/topic_0133
2688||419||Phylogenetic character data||http://edamontology.org/data_0871
2689||3942||Protein features report (super-secondary)||http://edamontology.org/data_0877
2690||568||Protein interactions||http://edamontology.org/topic_0128
2691||473||Secondary structure alignment (protein)||http://edamontology.org/data_0878
2692||3942||Secondary structure alignment metadata (protein)||http://edamontology.org/data_0879
2693||2817||GenePix 3.0.6||http://www.ebi.ac.uk/efo/swo/SWO_0000177
2694||2817||GenePix 4.1||http://www.ebi.ac.uk/efo/swo/SWO_0000178
2695||2652||GenePix 4100A||http://www.ebi.ac.uk/efo/swo/SWO_0000179
2696||1415||Animals||http://edamontology.org/topic_3500
2697||2480||Pathway or network analysis||http://edamontology.org/operation_2497
2698||2699||GeneSpringGX||http://www.ebi.ac.uk/efo/swo/SWO_0000194
2701||3942||Gene regulatory network processing||http://edamontology.org/operation_2496
2699||838||GeneSpring||http://www.ebi.ac.uk/efo/swo/SWO_0000193
2700||3772||DNA base trimer roll angles data||http://edamontology.org/data_1590
2703||1442||Splicing model analysis||http://edamontology.org/operation_2499
2702||838||GeneSelector||http://www.ebi.ac.uk/efo/swo/SWO_0000192
2704||3942||Sequencing-based expression profile data analysis||http://edamontology.org/operation_2498
2705||838||GeneSelectMMD||http://www.ebi.ac.uk/efo/swo/SWO_0000191
2706||3942||Codon usage data processing||http://edamontology.org/operation_2493
2708||2714||Sequence conversion||http://edamontology.org/operation_0233
2707||3942||Vienna RNA concentration data||http://edamontology.org/data_1593
2709||3942||Vienna RNA calculated energy||http://edamontology.org/data_1594
2712||1443||Protein interaction prediction||http://edamontology.org/operation_2492
2711||137||Sequence range format||http://edamontology.org/format_2078
2710||2714||Sequence merging||http://edamontology.org/operation_0232
2717||3942||Vienna RNA parameters||http://edamontology.org/data_1591
2714||1222||Sequence editing||http://edamontology.org/operation_0231
2716||838||GeneTraffic||http://www.ebi.ac.uk/efo/swo/SWO_0000196
2713||137||Protein secondary structure format||http://edamontology.org/format_2077
2715||2449||Gene expression data analysis||http://edamontology.org/operation_2495
2718||3942||Vienna RNA structure constraints||http://edamontology.org/data_1592
2720||838||GeneTac Analyser||http://www.ebi.ac.uk/efo/swo/SWO_0000195
2719||137||RNA secondary structure format||http://edamontology.org/format_2076
2721||2397||Sequence generation||http://edamontology.org/operation_0230
2724||137||HMM emission and transition counts format||http://edamontology.org/format_2075
2722||1964||Codon usage table||http://edamontology.org/data_1597
2723||2397||Repeat sequence analysis||http://edamontology.org/operation_0237
2725||3804||Sequence similarity score||http://edamontology.org/data_0865
2727||137||Dirichlet distribution format||http://edamontology.org/format_2074
2729||2397||Sequence composition calculation||http://edamontology.org/operation_0236
2726||2439||Genetic code||http://edamontology.org/data_1598
2728||3942||Sequence alignment parameter||http://edamontology.org/data_0864
2730||633||Sequence alignment||http://edamontology.org/data_0863
2732||2729||Sequence ambiguity calculation||http://edamontology.org/operation_0235
2731||3715||Base pairing probability matrix dotplot||http://edamontology.org/data_1595
2733||2653||Hidden Markov model format||http://edamontology.org/format_2072
2734||2729||Sequence complexity calculation||http://edamontology.org/operation_0234
2735||2750||Dotplot||http://edamontology.org/data_0862
2736||3763||Nucleic acid folding report||http://edamontology.org/data_1596
2737||3942||Sequence alignment (words)||http://edamontology.org/data_0861
2738||838||GeneRfold||http://www.ebi.ac.uk/efo/swo/SWO_0000190
2739||2304||Protein properties||http://edamontology.org/topic_0123
2740||526||Structural genomics||http://edamontology.org/topic_0122
2741||1964||Sequence signature data||http://edamontology.org/data_0860
2742||3942||Codon adaptation index||http://edamontology.org/data_1599
2744||1604||Proteomics||http://edamontology.org/topic_0121
2743||2820||Sequence signature recognition||http://edamontology.org/operation_0239
2745||2820||Sequence motif discovery||http://edamontology.org/operation_0238
2746||1784||Gene structure||http://edamontology.org/topic_0114
2747||633||Sequence profile alignment||http://edamontology.org/data_0868
2748||633||Sequence-profile alignment_2748||http://edamontology.org/data_0869
2749||3942||Sequence alignment metadata||http://edamontology.org/data_0866
2750||3668||Sequence alignment report||http://edamontology.org/data_0867
2751||838||GeneR||http://www.ebi.ac.uk/efo/swo/SWO_0000188
2752||838||GeneRegionScan||http://www.ebi.ac.uk/efo/swo/SWO_0000189
2755||838||GGtools||http://www.ebi.ac.uk/efo/swo/SWO_0000163
2753||1856||Genotyping experiment||http://edamontology.org/topic_3516
2754||2703||Splice transcript prediction||http://edamontology.org/operation_0264
2757||4017||Gamma Gamma Model||http://www.ebi.ac.uk/efo/swo/SWO_0000162
2756||1856||GWAS study||http://edamontology.org/topic_3517
2758||4017||Modified version of the GLAD algorithm (Gain and Loss Analysis of DNA)||http://www.ebi.ac.uk/efo/swo/SWO_0000165
2759||1856||Microarray experiment||http://edamontology.org/topic_3518
2760||3168||Vector sequence detection||http://edamontology.org/operation_0266
2761||838||GLAD||http://www.ebi.ac.uk/efo/swo/SWO_0000164
2764||1719||Frameshift detection||http://edamontology.org/operation_0265
2763||1856||PCR experiment||http://edamontology.org/topic_3519
2762||1936||Nucleic acid melting profile||http://edamontology.org/data_1583
2766||1284||Sequence alignment conversion||http://edamontology.org/operation_0260
2765||2319||Gene transcript features||http://edamontology.org/topic_3512
2767||838||GGBase||http://www.ebi.ac.uk/efo/swo/SWO_0000161
2768||2592||Nucleic acid property calculation||http://edamontology.org/operation_0262
2769||2690||Protein-ligand interactions||http://edamontology.org/topic_3514
2770||3942||Nucleic acid property processing||http://edamontology.org/operation_0261
2771||2769||Protein-drug interactions||http://edamontology.org/topic_3515
2772||3942||Transcription||http://edamontology.org/topic_0110
2773||3772||DNA base pair stacking energies data||http://edamontology.org/data_1588
2774||328||clustering specification||http://www.ebi.ac.uk/swo/algorithm/OntoDM_584946
2775||3772||DNA base pair twist angle data||http://edamontology.org/data_1589
2777||3942||Nucleic acid folding||http://edamontology.org/topic_0112
2776||1964||Sequence set||http://edamontology.org/data_0850
2778||3942||Promoters||http://edamontology.org/topic_0111
2781||3942||Sequence mask type||http://edamontology.org/data_0852
2779||1936||Nucleic acid enthalpy||http://edamontology.org/data_1584
2780||2783||Protein super-secondary structure prediction||http://edamontology.org/operation_0268
2782||3942||Sequence mask character||http://edamontology.org/data_0851
2783||1218||Protein secondary structure prediction||http://edamontology.org/operation_0267
2784||1936||Nucleic acid entropy||http://edamontology.org/data_1585
2786||3942||Sequence length specification||http://edamontology.org/data_0854
2785||3942||Nucleic acid melting temperature||http://edamontology.org/data_1586
2789||392||DNA sense specification||http://edamontology.org/data_0853
2788||2762||Nucleic acid stitch profile||http://edamontology.org/data_1587
2787||2783||Transmembrane protein prediction||http://edamontology.org/operation_0269
2790||3942||Sequence metadata||http://edamontology.org/data_0855
2791||840||Academic Free License version 3||http://www.ebi.ac.uk/swo/license/SWO_1000006
2794||3942||Genetic codes and codon usage||http://edamontology.org/topic_0107
2792||840||Apache license v2||http://www.ebi.ac.uk/swo/license/SWO_1000005
2793||2099||Sequence feature source||http://edamontology.org/data_0856
2797||840||Open source software license||http://www.ebi.ac.uk/swo/license/SWO_1000008
2796||2304||Protein expression||http://edamontology.org/topic_0108
2795||3691||Sequence search results||http://edamontology.org/data_0857
2799||840||FreeBSD||http://www.ebi.ac.uk/swo/license/SWO_1000007
2800||2741||Sequence signature matches||http://edamontology.org/data_0858
2798||3942||Gene finding||http://edamontology.org/topic_0109
2802||3942||Sequence signature model||http://edamontology.org/data_0859
2801||2331||Mapping||http://edamontology.org/topic_0102
2803||840||License without restrictions on derivatives||http://www.ebi.ac.uk/swo/license/SWO_1000009
2804||838||GEOquery||http://www.ebi.ac.uk/efo/swo/SWO_0000159
2805||1856||Proteomics experiment||http://edamontology.org/topic_3520
2806||2805||Northern blot experiment||http://edamontology.org/topic_3522
2807||2805||2D PAGE experiment||http://edamontology.org/topic_3521
2809||840||Proprietary commercial software license||http://www.ebi.ac.uk/swo/license/SWO_1000002
2808||838||GEMTools 2.4||http://www.ebi.ac.uk/efo/swo/SWO_0000155
2810||840||Creative Commons||http://www.ebi.ac.uk/swo/license/SWO_1000001
2811||1964||GEO data type||http://www.ebi.ac.uk/efo/swo/SWO_0000156
2813||840||GNU GPL||http://www.ebi.ac.uk/swo/license/SWO_1000004
2812||177||GEO Matrix Series format||http://www.ebi.ac.uk/efo/swo/SWO_0000157
2815||3986||MPL v1.1||http://www.ebi.ac.uk/swo/license/SWO_1000003
2814||838||GEOmetadb||http://www.ebi.ac.uk/efo/swo/SWO_0000158
2816||3942||Feature table query||http://edamontology.org/operation_0255
2817||838||Gene Pix||http://www.ebi.ac.uk/efo/swo/SWO_0000176
2818||838||GeneData Expressionist Analyst v4.0.5||http://www.ebi.ac.uk/efo/swo/SWO_0000175
2819||3942||Data retrieval (feature table)||http://edamontology.org/operation_0254
2821||4017||Gene-Set Enrichment Analysis||http://www.ebi.ac.uk/efo/swo/SWO_0000174
2820||2397||Sequence feature detection||http://edamontology.org/operation_0253
2822||4017||Gaussian locally weighted regression||http://www.ebi.ac.uk/efo/swo/SWO_0000173
2823||1229||Peptide immunogenicity prediction||http://edamontology.org/operation_0252
2824||4017||Gamma-Gamma hierarchical model||http://www.ebi.ac.uk/efo/swo/SWO_0000172
2826||1443||Protein property calculation||http://edamontology.org/operation_0250
2825||838||GSEAlm||http://www.ebi.ac.uk/efo/swo/SWO_0000171
2827||838||GSEABase||http://www.ebi.ac.uk/efo/swo/SWO_0000170
2828||3942||Nucleic acid restriction||http://edamontology.org/topic_0100
2831||3942||Database entry||http://edamontology.org/data_0843
2830||177||ambiguous||http://edamontology.org/format_2097
2829||2453||Sequence alignment comparison||http://edamontology.org/operation_0259
2834||177||unambiguous sequence||http://edamontology.org/format_2096
2833||1964||Identifier||http://edamontology.org/data_0842
2832||2397||Sequence alignment analysis||http://edamontology.org/operation_0258
2835||3942||Data retrieval (sequence alignment)||http://edamontology.org/operation_0257
2836||177||unpure||http://edamontology.org/format_2095
2838||177||pure||http://edamontology.org/format_2094
2837||2397||Sequence feature comparison||http://edamontology.org/operation_0256
2839||3648||Chemical formula||http://edamontology.org/data_0846
2840||3648||QSAR descriptor||http://edamontology.org/data_0847
2841||3648||Molecular mass||http://edamontology.org/data_0844
2842||3648||Molecular charge||http://edamontology.org/data_0845
2843||3684||Raw sequence||http://edamontology.org/data_0848
2844||3684||Sequence record||http://edamontology.org/data_0849
2845||3054||Nucleic acid sites, features and motifs||http://edamontology.org/topic_3511
2846||3054||Protein sites, features and motifs||http://edamontology.org/topic_3510
2847||838||GOstats||http://www.ebi.ac.uk/efo/swo/SWO_0000168
2848||4017||Gene Recommender algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000169
2849||838||GLEAMS software||http://www.ebi.ac.uk/efo/swo/SWO_0000166
2850||838||GMS||http://www.ebi.ac.uk/efo/swo/SWO_0000167
2851||2544||Sequence distance matrix generation||http://edamontology.org/operation_0289
2852||3942||Resource type||http://edamontology.org/data_0005
2853||3942||MeSH vocabulary||http://edamontology.org/data_0831
2854||3942||Tool||http://edamontology.org/data_0007
2856||137||Article format||http://edamontology.org/format_2020
2855||3942||HGNC vocabulary||http://edamontology.org/data_0832
2857||3942||Genetic marker identification||http://edamontology.org/operation_0281
2858||3150||Genetic mapping||http://edamontology.org/operation_0282
2859||137||Enzyme kinetics report format||http://edamontology.org/format_2027
2860||2592||Linkage analysis||http://edamontology.org/operation_0283
2861||2468||Codon usage table generation||http://edamontology.org/operation_0284
2862||1106||Codon usage table comparison||http://edamontology.org/operation_0285
2863||137||Text mining report format||http://edamontology.org/format_2021
2864||1964||FACS data||http://www.ebi.ac.uk/efo/swo/SWO_0000140
2866||4017||FARMS||http://www.ebi.ac.uk/efo/swo/SWO_0000141
2865||2592||Codon usage analysis||http://edamontology.org/operation_0286
2868||3942||obsolete_FASTA||http://www.ebi.ac.uk/efo/swo/SWO_0000142
2867||2865||Base position variability plotting||http://edamontology.org/operation_0287
2869||4017||FC||http://www.ebi.ac.uk/efo/swo/SWO_0000143
2870||2544||Sequence word comparison||http://edamontology.org/operation_0288
2871||838|| EBarrays ||http://www.ebi.ac.uk/efo/swo/SWO_0000134
2872||137||Bibliographic reference format||http://edamontology.org/format_2848
2873||838|| EBImage ||http://www.ebi.ac.uk/efo/swo/SWO_0000133
2874||4017||Expectation-Maximization(EM) algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000135
2875||838||Expert 2100||http://www.ebi.ac.uk/efo/swo/SWO_0000138
2876||4017||Empirical Bayes rule||http://www.ebi.ac.uk/efo/swo/SWO_0000137
2877||2407||Splitting||http://edamontology.org/operation_3359
2878||2544||Sequence clustering||http://edamontology.org/operation_0291
2880||3942||obsolete_FACS ( fluorescence-activated cell sorter)||http://www.ebi.ac.uk/efo/swo/SWO_0000139
2879||2544||Sequence redundancy removal||http://edamontology.org/operation_0290
2881||2407||Format detection||http://edamontology.org/operation_3357
2882||2453||Ontology comparison||http://edamontology.org/operation_3353
2883||2453||Ontology comparison_2883||http://edamontology.org/operation_3352
2884||2668||Protein surface analysis||http://edamontology.org/operation_3351
2885||3967||Protein quaternary structure prediction||http://edamontology.org/operation_3350
2886||3942||UMLS vocabulary||http://edamontology.org/data_0835
2887||137||Small molecule report format||http://edamontology.org/format_2030
2888||137||Gene annotation format||http://edamontology.org/format_2031
2889||2479||RNA secondary structure prediction||http://edamontology.org/operation_0278
2890||1442||Nucleic acid folding prediction||http://edamontology.org/operation_0279
2891||2668||Residue interaction prediction||http://edamontology.org/operation_0272
2892||2896||Phylogenetic discrete states format||http://edamontology.org/format_2038
2893||4017||FoxDimmicT||http://www.ebi.ac.uk/efo/swo/SWO_0000150
2894||1197||Protein interaction raw data analysis||http://edamontology.org/operation_0273
2895||2896||Phylogenetic tree report (cliques) format||http://edamontology.org/format_2039
2896||137||Phylogenetic character data format||http://edamontology.org/format_2036
2897||3173||Transmembrane protein analysis||http://edamontology.org/operation_0270
2898||2456||Structure prediction||http://edamontology.org/operation_0271
2899||2896||Phylogenetic continuous quantitative character format||http://edamontology.org/format_2037
2900||4017||GASSCO method||http://www.ebi.ac.uk/efo/swo/SWO_0000153
2901||3942||Biological model format||http://edamontology.org/format_2034
2902||1197||Protein interaction network analysis||http://edamontology.org/operation_0276
2905||838||GC-RMA Quantification_2905||http://www.ebi.ac.uk/efo/swo/SWO_0000154
2904||137||Chemical formula format||http://edamontology.org/format_2035
2903||496||Protein interaction network comparison||http://edamontology.org/operation_0277
2906||137||Workflow format||http://edamontology.org/format_2032
2907||492||Protein-protein interaction prediction (from protein sequence)||http://edamontology.org/operation_0274
2909||1218||Protein-protein interaction prediction (from protein structure)||http://edamontology.org/operation_0275
2908||838||GACK||http://www.ebi.ac.uk/efo/swo/SWO_0000152
2910||137||Tertiary structure format||http://edamontology.org/format_2033
2911||838||Agilent Feature Extraction Software||http://www.ebi.ac.uk/efo/swo/SWO_0000147
2912||4017||Fixed effect model||http://www.ebi.ac.uk/efo/swo/SWO_0000146
2913||4017|| FDR ||http://www.ebi.ac.uk/efo/swo/SWO_0000145
2914||3942||obsolete_FCS||http://www.ebi.ac.uk/efo/swo/SWO_0000144
2916||3286||Sequence checksum generation||http://edamontology.org/operation_3348
2915||3942||Data retrieval (restriction enzyme annotation)||http://edamontology.org/operation_0280
2917||4017||Fischer s Exact Test||http://www.ebi.ac.uk/efo/swo/SWO_0000149
2919||4017||Firth s bias reduction procedure||http://www.ebi.ac.uk/efo/swo/SWO_0000148
2918||3286||Bibliography generation||http://edamontology.org/operation_3349
2920||3309||Primers||http://edamontology.org/topic_0922
2921||2896||Phylogenetic tree report (invariants) format||http://edamontology.org/format_2040
2923||838|| CoCiteStats ||http://www.ebi.ac.uk/efo/swo/SWO_0000120
2922||3942||Electron microscopy model format||http://edamontology.org/format_2045
2924||838||CodeLink Expression Analysis Software||http://www.ebi.ac.uk/efo/swo/SWO_0000121
2925||137||Phylogenetic tree report (tree distances) format||http://edamontology.org/format_2049
2926||1964||Text data set||http://www.ebi.ac.uk/efo/swo/SWO_0000116
2927||838||MAGE-TAB inputting software||http://www.ebi.ac.uk/efo/swo/SWO_0000115
2928||4017||Non-linear functional regression model||http://www.ebi.ac.uk/efo/swo/SWO_0000118
2929||1964||CSV data set||http://www.ebi.ac.uk/efo/swo/SWO_0000117
2930||4017||BCRANK||http://www.ebi.ac.uk/efo/swo/SWO_0000112
2931||838||R software||http://www.ebi.ac.uk/efo/swo/SWO_0000111
2932||4017||F test_2932||http://www.ebi.ac.uk/efo/swo/SWO_0000114
2933||4017||Cosmo||http://www.ebi.ac.uk/efo/swo/SWO_0000113
2934||137||Protein family report format||http://edamontology.org/format_2052
2935||3942||Polymorphism report format||http://edamontology.org/format_2051
2937||137||Microarray experiment data format||http://edamontology.org/format_2056
2936||2949||Profile-to-profile alignment||http://edamontology.org/operation_0298
2938||838|| DynDoc ||http://www.ebi.ac.uk/efo/swo/SWO_0000132
2940||2948||3D profile-to-3D profile alignment||http://edamontology.org/operation_0299
2939||3590||Sequence trace format||http://edamontology.org/format_2057
2941||137||Protein interaction format||http://edamontology.org/format_2054
2942||2832||Sequence profile generation||http://edamontology.org/operation_0296
2944||838|| DNAcopy ||http://www.ebi.ac.uk/efo/swo/SWO_0000130
2943||137||Sequence assembly format||http://edamontology.org/format_2055
2945||2576||3D profile generation||http://edamontology.org/operation_0297
2947||4038||software development process||http://www.ebi.ac.uk/swo/organization/SWO_9000056
2946||2949||Structure-based sequence alignment||http://edamontology.org/operation_0294
2948||856||Structure alignment||http://edamontology.org/operation_0295
2949||856||Sequence alignment generation||http://edamontology.org/operation_0292
2950||2888||Gene expression report format||http://edamontology.org/format_2058
2951||4038||software publishing process||http://www.ebi.ac.uk/swo/organization/SWO_9000055
2952||3942||Genotype and phenotype annotation format||http://edamontology.org/format_2059
2953||3942||Hybrid sequence alignment construction||http://edamontology.org/operation_0293
2954||1964||Digital gene expression (DGE) datasets||http://www.ebi.ac.uk/efo/swo/SWO_0000129
2955||4017||DFW||http://www.ebi.ac.uk/efo/swo/SWO_0000128
2956||4017||Discriminant Fuzzy Pattern Algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000127
2957||838|| DFP ||http://www.ebi.ac.uk/efo/swo/SWO_0000126
2958||838|| DEDS ||http://www.ebi.ac.uk/efo/swo/SWO_0000125
2959||838||Cyber-T||http://www.ebi.ac.uk/efo/swo/SWO_0000124
2960||4017||Complex Estimation Algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000123
2961||838||CodeLink Expression Scanning Software||http://www.ebi.ac.uk/efo/swo/SWO_0000122
2962||839||data mining task||http://kt.ijs.si/panovp/OntoDM#OntoDM_000098
2963||547||Biodiversity||http://edamontology.org/topic_3050
2964||3942||Sequence clusters and classification||http://edamontology.org/topic_3052
2965||2994||Genetics||http://edamontology.org/topic_3053
2966||2965||Population genetics||http://edamontology.org/topic_3056
2967||529||Quantitative genetics||http://edamontology.org/topic_3055
2968||2962||pattern discovery task||http://kt.ijs.si/panovp/OntoDM#OntoDM_000092
2969||4017||Chi-square||http://www.ebi.ac.uk/efo/swo/SWO_0000108
2970||838||Annotation-Driven Clustering||http://www.ebi.ac.uk/efo/swo/SWO_0000109
2971||1763||Medical informatics||http://edamontology.org/topic_3063
2972||3942||Genetic organisation||http://edamontology.org/topic_3062
2973||2962||probability distribution estimation task||http://kt.ijs.si/panovp/OntoDM#OntoDM_000087
2974||2986||Documentation and help||http://edamontology.org/topic_3061
2975||3942||Regulatory RNA||http://edamontology.org/topic_3060
2977||838||ChipReader 3.1||http://www.ebi.ac.uk/efo/swo/SWO_0000100
2976||1825||Anatomy||http://edamontology.org/topic_3067
2978||838||ChipSkipper||http://www.ebi.ac.uk/efo/swo/SWO_0000101
2979||2978||ChipSkipper V0.99||http://www.ebi.ac.uk/efo/swo/SWO_0000102
2980||2982||Embryology||http://edamontology.org/topic_3065
2981||838||multiscan||http://www.ebi.ac.uk/efo/swo/SWO_0000103
2982||2994||Developmental biology||http://edamontology.org/topic_3064
2983||838||affy||http://www.ebi.ac.uk/efo/swo/SWO_0000104
2984||838||affycomp||http://www.ebi.ac.uk/efo/swo/SWO_0000105
2985||4017||PCMG||http://www.ebi.ac.uk/efo/swo/SWO_0000106
2986||2229||Literature and reference||http://edamontology.org/topic_3068
2987||2292||Feature Extraction Software||http://www.ebi.ac.uk/efo/swo/SWO_0000107
2988||839||distance calculation||http://www.ebi.ac.uk/efo/swo/SWO_0000110
2989||3942||Sequence feature detection||http://edamontology.org/topic_3072
2990||2229||Data management||http://edamontology.org/topic_3071
2992||3942||Protein feature detection||http://edamontology.org/topic_3074
2991||328||pattern specification||http://kt.ijs.si/panovp/OntoDM#OntoDM_000078
2993||3942||Nucleic acid feature detection||http://edamontology.org/topic_3073
2994||2229||Biology||http://edamontology.org/topic_3070
2995||3942||Biological system modelling||http://edamontology.org/topic_3075
2996||3942||Genes and proteins resources||http://edamontology.org/topic_3078
2997||2990||Data acquisition||http://edamontology.org/topic_3077
2998||3942||Phylogeny reconstruction||http://edamontology.org/topic_0191
2999||529||Genetic variation||http://edamontology.org/topic_0199
3000||2331||Sequence assembly||http://edamontology.org/topic_0196
3001||3942||Virtual PCR||http://edamontology.org/topic_0195
3002||526||Phylogenomics||http://edamontology.org/topic_0194
3003||839||document outlining||http://www.ebi.ac.uk/swo/objective/SWO_4000003
3004||839||image compression||http://www.ebi.ac.uk/swo/objective/SWO_4000004
3005||839||ontology engineering||http://www.ebi.ac.uk/swo/objective/SWO_4000005
3006||3942||Protein tertiary structure prediction||http://edamontology.org/topic_0179
3007||839||word processing||http://www.ebi.ac.uk/swo/objective/SWO_4000006
3008||839||software development||http://www.ebi.ac.uk/swo/objective/SWO_4000007
3009||839||simulation and analysis of biochemical networks||http://www.ebi.ac.uk/swo/objective/SWO_4000008
3010||839||laboratory information management||http://www.ebi.ac.uk/swo/objective/SWO_4000009
3011||2334||Protein fold recognition||http://edamontology.org/topic_0180
3012||3942||Sequence profiles and HMMs||http://edamontology.org/topic_0188
3013||3942||Structure alignment||http://edamontology.org/topic_0183
3014||3942||Sequence alignment||http://edamontology.org/topic_0182
3015||839||spreadsheet editing||http://www.ebi.ac.uk/swo/objective/SWO_4000001
3016||3942||Threading||http://edamontology.org/topic_0184
3017||2676||Protein key folding sites||http://edamontology.org/topic_3540
3018||2846||Protein sequence repeats||http://edamontology.org/topic_3543
3019||2846||Protein signal peptides||http://edamontology.org/topic_3544
3020||2846||Protein post-translational modifications||http://edamontology.org/topic_3541
3021||1409||Protein secondary structure||http://edamontology.org/topic_3542
3022||839||citation management||http://www.ebi.ac.uk/swo/objective/SWO_4000017
3023||839||molecular sequence analysis||http://www.ebi.ac.uk/swo/objective/SWO_4000016
3024||839||modelling||http://www.ebi.ac.uk/swo/objective/SWO_4000015
3025||839||biological data processing||http://www.ebi.ac.uk/swo/objective/SWO_4000014
3026||839||annotation editing||http://www.ebi.ac.uk/swo/objective/SWO_4000013
3028||839||text editing||http://www.ebi.ac.uk/swo/objective/SWO_4000011
3027||2317||Nucleic acid structure prediction||http://edamontology.org/topic_0173
3029||3942||Ab initio structure prediction||http://edamontology.org/topic_0174
3030||839||file rendering||http://www.ebi.ac.uk/swo/objective/SWO_4000012
3032||1409||Protein structure prediction||http://edamontology.org/topic_0172
3031||839||manage computer operations||http://www.ebi.ac.uk/swo/objective/SWO_4000010
3033||2334||Molecular docking||http://edamontology.org/topic_0177
3034||3942||Protein secondary structure prediction||http://edamontology.org/topic_0178
3035||3942||Homology modelling||http://edamontology.org/topic_0175
3036||2334||Molecular dynamics||http://edamontology.org/topic_0176
3037||181||phyloXML||http://edamontology.org/format_3159
3038||2846||Protein chemical modifications||http://edamontology.org/topic_3537
3040||181||PSI MI XML (MIF)||http://edamontology.org/format_3158
3039||2846||Protein cleavage sites||http://edamontology.org/topic_3536
3041||3062||Protein-nucleic acid binding sites||http://edamontology.org/topic_3535
3042||3062||Protein binding sites||http://edamontology.org/topic_3534
3043||181||SBRML||http://edamontology.org/format_3155
3045||1032||Protein domains||http://edamontology.org/topic_3539
3044||181||EBI Application Result XML||http://edamontology.org/format_3157
3046||2476||BioPAX||http://edamontology.org/format_3156
3047||2846||Protein disordered structure||http://edamontology.org/topic_3538
3048||568||Genetic information processing pathways||http://edamontology.org/topic_3530
3049||3062||Protein super-secondary structure||http://edamontology.org/topic_3531
3050||3062||Protein active sites||http://edamontology.org/topic_3533
3051||3942||Sequence motifs||http://edamontology.org/topic_0158
3052||2331||Sequence composition, complexity and repeats||http://edamontology.org/topic_0157
3053||2331||Sequence comparison||http://edamontology.org/topic_0159
3055||177||GTrack||http://edamontology.org/format_3164
3054||2331||Sequence sites, features and motifs||http://edamontology.org/topic_0160
3056||181||GCDML||http://edamontology.org/format_3163
3057||177||MAGE-TAB||http://edamontology.org/format_3162
3059||3942||Sequence database search||http://edamontology.org/topic_0163
3058||181||MAGE-ML||http://edamontology.org/format_3161
3060||3942||Sequence clustering||http://edamontology.org/topic_0164
3061||181||NeXML||http://edamontology.org/format_3160
3062||1409||Protein structural motifs and surfaces||http://edamontology.org/topic_0166
3063||3942||Structural (3D) profiles||http://edamontology.org/topic_0167
3064||1856||Simulation experiment||http://edamontology.org/topic_3524
3065||714||RNAi experiment||http://edamontology.org/topic_3523
3066||2690||Protein-protein interactions||http://edamontology.org/topic_3526
3067||2690||Protein-nucleic acid interactions||http://edamontology.org/topic_3525
3068||568||Disease pathways||http://edamontology.org/topic_3528
3069||137||Experiment annotation format||http://edamontology.org/format_3167
3070||568||Cellular process pathways||http://edamontology.org/topic_3527
3071||137||Biological pathway or network report format||http://edamontology.org/format_3166
3072||568||Environmental information processing pathways||http://edamontology.org/topic_3529
3073||3942||Structure databases||http://edamontology.org/topic_3038
3074||3942||Primer or probe design||http://edamontology.org/topic_3032
3075||3942||ColiCard report format||http://edamontology.org/format_1810
3076||3942||Protein structural motifs and surfaces||http://edamontology.org/data_0899
3077||3942||Protein-nucleic acid interactions||http://edamontology.org/topic_0149
3078||3942||Protein-ligand interactions||http://edamontology.org/topic_0148
3079||3942||Protein-protein interactions||http://edamontology.org/topic_0147
3081||3942||Annotation retrieval (sequence)||http://edamontology.org/operation_0229
3080||633||Sequence-structure alignment||http://edamontology.org/data_0893
3083||3942||Amino acid annotation||http://edamontology.org/data_0894
3082||3942||Sequence editing||http://edamontology.org/topic_0156
3086||268||Lipids||http://edamontology.org/topic_0153
3084||2407||Indexing||http://edamontology.org/operation_0227
3085||3942||Sequence-3D profile alignment||http://edamontology.org/data_0891
3087||268||Small molecules||http://edamontology.org/topic_0154
3089||3768||Protein sequence-structure scoring matrix||http://edamontology.org/data_0892
3088||3942||Data index analysis||http://edamontology.org/operation_0228
3090||3942||G protein-coupled receptors (GPCR)||http://edamontology.org/topic_0151
3092||3942||Data retrieval (database cross-reference)||http://edamontology.org/operation_0225
3091||3775||Protein property||http://edamontology.org/data_0897
3094||1206||Annotation||http://edamontology.org/operation_0226
3093||268||Carbohydrates||http://edamontology.org/topic_0152
3095||3942||Peptide annotation||http://edamontology.org/data_0895
3098||839||Query and retrieval||http://edamontology.org/operation_0224
3096||3668||Protein report||http://edamontology.org/data_0896
3097||3942||Protein design||http://edamontology.org/topic_0150
3099||633||Structural (3D) profile alignment||http://edamontology.org/data_0890
3100||3942||Mammals||http://edamontology.org/topic_3048
3101||2994||Molecular biology||http://edamontology.org/topic_3047
3102||3942||Protein interaction networks||http://edamontology.org/topic_3044
3103||3942||Nucleic acid sequences||http://edamontology.org/topic_3042
3104||3942||Protein sequences||http://edamontology.org/topic_3043
3105||1964||Structural profile||http://edamontology.org/data_0889
3106||3942||Sequence databases||http://edamontology.org/topic_3041
3107||3804||Structure similarity score||http://edamontology.org/data_0888
3108||3942||Protein microarrays||http://edamontology.org/topic_0135
3109||3942||GeneIlluminator gene report format||http://edamontology.org/format_1808
3110||3942||BacMap gene card format||http://edamontology.org/format_1809
3111||3942||Protein hydropathy||http://edamontology.org/topic_0137
3112||2173||RNA secondary structure||http://edamontology.org/data_0880
3113||1007||Secondary structure alignment (RNA)||http://edamontology.org/data_0881
3114||3942||Protein structure comparison||http://edamontology.org/topic_0143
3115||3942||Protein residue interactions||http://edamontology.org/topic_0144
3116||3942||Secondary structure alignment metadata (RNA)||http://edamontology.org/data_0882
3117||1964||Structure||http://edamontology.org/data_0883
3118||3942||Tertiary structure record||http://edamontology.org/data_0884
3119||3942||Structure database search results||http://edamontology.org/data_0885
3120||633||Structure alignment||http://edamontology.org/data_0886
3121||2796||Protein targeting and localization||http://edamontology.org/topic_0140
3123||3942||Protein cleavage sites and proteolysis||http://edamontology.org/topic_0141
3122||3668||Structure alignment report||http://edamontology.org/data_0887
3124||3942||Nucleic acid structure||http://edamontology.org/topic_3039
3125||56||Clone ID (IMAGE)||http://edamontology.org/data_2704
3126||1512||Chromosome name (BioCyc)||http://edamontology.org/data_2706
3127||482||GO concept ID (cellular compartment)||http://edamontology.org/data_2705
3128||3942||Structure processing (nucleic acid)||http://edamontology.org/operation_2519
3129||5||CleanEx entry name||http://edamontology.org/data_2709
3130||2708||DNA back-translation||http://edamontology.org/operation_2510
3131||3942||Nucleic acid sequence visualisation||http://edamontology.org/operation_2515
3132||3942||Protein sequence visualisation||http://edamontology.org/operation_2516
3133||1106||Nucleic acid structure comparison||http://edamontology.org/operation_2518
3134||3942||Sequence editing (nucleic acid)||http://edamontology.org/operation_2511
3136||277||CATH identifier||http://edamontology.org/data_2700
3135||3942||Sequence editing (protein)||http://edamontology.org/operation_2512
3137||284||CATH node ID (family)||http://edamontology.org/data_2701
3138||2721||Sequence generation (nucleic acid)||http://edamontology.org/operation_2513
3139||981||Enzyme ID (CAZy)||http://edamontology.org/data_2702
3140||2721||Sequence generation (protein)||http://edamontology.org/operation_2514
3141||436||Oligonucleotide probe annotation||http://edamontology.org/data_2717
3142||2107||DBD ID||http://edamontology.org/data_2716
3143||2072||Protein ID (CuticleDB)||http://edamontology.org/data_2715
3144||654||CDD PSSM-ID||http://edamontology.org/data_2714
3145||4024||generalization specification||http://kt.ijs.si/panovp/OntoDM#OntoDM_000034
3146||3147||dbProbe ID||http://edamontology.org/data_2719
3147||2068||Oligonucleotide ID||http://edamontology.org/data_2718
3148||4017||data mining algorithm||http://kt.ijs.si/panovp/OntoDM#OntoDM_000038
3149||3145||ensemble specification||http://kt.ijs.si/panovp/OntoDM#OntoDM_000037
3150||2466||DNA mapping||http://edamontology.org/operation_2520
3151||3942||Map data processing||http://edamontology.org/operation_2521
3152||2072||Protein ID (CORUM)||http://edamontology.org/data_2713
3153||18||CleanEx dataset code||http://edamontology.org/data_2710
3154||398||Genome report||http://edamontology.org/data_2711
3155||3159||COGEME EST ID||http://edamontology.org/data_2729
3156||3942||Structure retrieval (water)||http://edamontology.org/operation_1914
3157||3942||Inhibitor annotation||http://edamontology.org/data_2726
3158||958||Ensembl transcript ID||http://edamontology.org/data_2725
3159||56||EST accession||http://edamontology.org/data_2728
3160||1605||Promoter ID||http://edamontology.org/data_2727
3161||3147||DiProDB ID||http://edamontology.org/data_2721
3162||3942||Protein features report (disordered structure)||http://edamontology.org/data_2722
3163||2072||Protein ID (DisProt)||http://edamontology.org/data_2723
3164||3942||Embryo report||http://edamontology.org/data_2724
3165||3507||Residue validation||http://edamontology.org/operation_1913
3166||3772||Dinucleotide property||http://edamontology.org/data_2720
3167||1108||Protein sequence comparison||http://edamontology.org/operation_2509
3168||1106||Nucleic acid sequence comparison||http://edamontology.org/operation_2508
3169||2386||Gene ID (Genolist)||http://edamontology.org/data_2739
3170||2386||Gene ID (Xenbase)||http://edamontology.org/data_2738
3171||2386||FIG ID||http://edamontology.org/data_2737
3172||305||Sequence feature ID (SwissRegulon)||http://edamontology.org/data_2736
3175||3942||Family name (virus)||http://edamontology.org/data_2734
3174||2439||Codon usage bias plot||http://edamontology.org/data_1600
3173||2449||Protein analysis||http://edamontology.org/operation_2502
3176||3942||Sequence data processing||http://edamontology.org/operation_2503
3177||3942||Database name (SwissRegulon)||http://edamontology.org/data_2735
3180||3942||Microarray raw data analysis||http://edamontology.org/operation_2500
3179||12||Family name||http://edamontology.org/data_2732
3178||2439||Codon usage fraction difference||http://edamontology.org/data_1602
3183||3942||Nc statistic||http://edamontology.org/data_1601
3181||3942||Genus name (virus)||http://edamontology.org/data_2733
3182||2449||Nucleic acid analysis||http://edamontology.org/operation_2501
3185||1443||Protein sequence alignment analysis||http://edamontology.org/operation_2506
3184||3159||COGEME unisequence ID||http://edamontology.org/data_2730
3187||1442||Nucleic acid sequence alignment analysis||http://edamontology.org/operation_2507
3186||2108||Protein family ID (GeneFarm)||http://edamontology.org/data_2731
3188||3942||Structural data processing||http://edamontology.org/operation_2504
3189||3942||Text processing||http://edamontology.org/operation_2505
3190||3942||Database name (CMD)||http://edamontology.org/data_2747
3191||3942||Database name (Osteogenesis)||http://edamontology.org/data_2748
3192||1605||Genome identifier||http://edamontology.org/data_2749
3193||3942||Gene name (Genolist)||http://edamontology.org/data_2740
3194||2107||AraC-XylS ID||http://edamontology.org/data_2742
3195||3160||ABS ID||http://edamontology.org/data_2741
3196||190||Locus ID (PseudoCAP)||http://edamontology.org/data_2744
3197||3942||Gene name (HUGO)||http://edamontology.org/data_2743
3198||3725||MonosaccharideDB ID||http://edamontology.org/data_2746
3199||190||Locus ID (UTR)||http://edamontology.org/data_2745
3200||838||software before Microsoft 2007||http://www.ebi.ac.uk/swo/software_before_Microsoft_2007
3202||2108||Pfam clan ID||http://edamontology.org/data_2758
3203||2386||Gene ID (VectorBase)||http://edamontology.org/data_2759
3204||1807||Carbohydrate conformational map||http://edamontology.org/data_2753
3205||2080||GlycoMap ID||http://edamontology.org/data_2752
3206||2065||GenomeReviews ID||http://edamontology.org/data_2751
3207||685||Pfam domain name||http://edamontology.org/data_2757
3208||2072||TCID||http://edamontology.org/data_2756
3209||32||Transcription factor name||http://edamontology.org/data_2755
3210||3942||Gene features report (intron)||http://edamontology.org/data_2754
3211||177||PlasMapper TextMap||http://edamontology.org/format_1861
3212||2068||Transcript ID||http://edamontology.org/data_2769
3213||2108||HAMAP ID||http://edamontology.org/data_2766
3214||3942||Term ID list||http://edamontology.org/data_2765
3215||3942||Gene symbol annotation||http://edamontology.org/data_2768
3216||2833||Identifier with metadata||http://edamontology.org/data_2767
3217||3668||Sequence signature report||http://edamontology.org/data_2762
3218||651||UTRSite ID||http://edamontology.org/data_2761
3219||246||Protein name (UniProt)||http://edamontology.org/data_2764
3220||3942||Locus annotation||http://edamontology.org/data_2763
3221||1605||Stock number||http://edamontology.org/data_2779
3222||2095||CCAP strain number||http://edamontology.org/data_2778
3223||2103||ConsensusPathDB entity name||http://edamontology.org/data_2777
3224||2103||ConsensusPathDB entity ID||http://edamontology.org/data_2776
3225||246||Kinase name||http://edamontology.org/data_2775
3226||2386||Gene ID (JCVI)||http://edamontology.org/data_2774
3227||2072||IMGT/HLA ID||http://edamontology.org/data_2773
3228||2072||HPA antibody id||http://edamontology.org/data_2772
3229||2386||HIX ID||http://edamontology.org/data_2771
3230||3212||HIT ID||http://edamontology.org/data_2770
3231||3942||Genetic information processing pathway report||http://edamontology.org/data_1657
3232||3942||Metabolic pathway report||http://edamontology.org/data_1656
3233||3942||Environmental information processing pathway report||http://edamontology.org/data_1658
3234||3942||Signal transduction pathway report||http://edamontology.org/data_1659
3235||3942||Cellular process pathways report||http://edamontology.org/data_1660
3236||3942||MIRIAM datatype||http://edamontology.org/data_1664
3237||3942||Protein interaction networks_3237||http://edamontology.org/data_1663
3238||3370||Drug structure relationship map||http://edamontology.org/data_1662
3239||3942||Disease pathway or network report||http://edamontology.org/data_1661
3240||1668||Z-value||http://edamontology.org/data_1668
3241||1668||E-value||http://edamontology.org/data_1667
3242||1668||P-value||http://edamontology.org/data_1669
3243||3942||Tool version information||http://edamontology.org/data_1671
3244||3942||Database version information||http://edamontology.org/data_1670
3245||2712||Protein binding site prediction||http://edamontology.org/operation_2575
3246||2826||Protein hydropathy calculation||http://edamontology.org/operation_2574
3247||3942||Job type||http://edamontology.org/data_1677
3248||3942||Job ID||http://edamontology.org/data_1676
3249||3942||DaliLite log file||http://edamontology.org/data_1679
3250||3942||Tool log||http://edamontology.org/data_1678
3251||3942||Swiss-Prot to PDB mapping||http://edamontology.org/data_1673
3252||3942||CATH version information||http://edamontology.org/data_1672
3253||3942||Job status||http://edamontology.org/data_1675
3254||3942||Sequence database cross-references||http://edamontology.org/data_1674
3255||3942||EMBOSS wordfinder log file||http://edamontology.org/data_1682
3256||3942||NACCESS log file||http://edamontology.org/data_1681
3257||3942||STRIDE log file||http://edamontology.org/data_1680
3258||2137||Username||http://edamontology.org/data_1689
3259||3942||EMBOSS vectorstrip log file||http://edamontology.org/data_1688
3260||3942||EMBOSS whichdb log file||http://edamontology.org/data_1687
3261||3942||EMBOSS megamerger log file||http://edamontology.org/data_1686
3262||3942||EMBOSS supermatcher error file||http://edamontology.org/data_1685
3263||3942||EMBOSS sites log file||http://edamontology.org/data_1684
3264||3942||EMBOSS domainatrix log file||http://edamontology.org/data_1683
3265||2450||web service||http://www.ebi.ac.uk/swo/interface/SWO_9000051
3266||2450||application programming interface||http://www.ebi.ac.uk/swo/interface/SWO_9000054
3267||2450||graphical user interface||http://www.ebi.ac.uk/swo/interface/SWO_9000052
3268||2450||command-line interface||http://www.ebi.ac.uk/swo/interface/SWO_9000053
3269||3272||Cell migration analysis||http://edamontology.org/operation_3446
3270||3271||Diffraction data reduction||http://edamontology.org/operation_3447
3271||2576||Diffraction data analysis||http://edamontology.org/operation_3445
3272||2449||Image analysis||http://edamontology.org/operation_3443
3273||3540||Genome assembly||http://edamontology.org/operation_3440
3274||1206||Plotting||http://edamontology.org/operation_3441
3275||1687||Pharmacogenomic test report||http://edamontology.org/data_1621
3276||1687||Disease report||http://edamontology.org/data_1622
3277||2576||Single particle analysis||http://edamontology.org/operation_3457
3278||1099||Single particle alignment and classification||http://edamontology.org/operation_3458
3279||2878||Functional clustering||http://edamontology.org/operation_3459
3280||3271||Diffraction data integration||http://edamontology.org/operation_3453
3281||3271||Phasing||http://edamontology.org/operation_3454
3282||3515||Molecular replacement||http://edamontology.org/operation_3455
3283||3515||Rigid body refinement||http://edamontology.org/operation_3456
3284||3272||Neurite measurement||http://edamontology.org/operation_3450
3285||3942||Linkage disequilibrium (report)||http://edamontology.org/data_1634
3286||1206||Generation||http://edamontology.org/operation_3429
3287||966||Heat map||http://edamontology.org/data_1636
3288||1613||Molecular weights standard fingerprint||http://edamontology.org/data_1646
3289||3942||Affymetrix probe sets information library file||http://edamontology.org/data_1643
3290||3942||Affymetrix probe sets library file||http://edamontology.org/data_1642
3291||1206||Standardization and normalization||http://edamontology.org/operation_3435
3292||2407||Aggregation||http://edamontology.org/operation_3436
3293||2453||Article comparison||http://edamontology.org/operation_3437
3294||1206||Calculation||http://edamontology.org/operation_3438
3295||2456||Pathway or network prediction||http://edamontology.org/operation_3439
3296||2820||Nucleic acid sequence feature detection||http://edamontology.org/operation_3430
3297||839||Deposition||http://edamontology.org/operation_3431
3298||1206||Clustering||http://edamontology.org/operation_3432
3299||1206||Assembly||http://edamontology.org/operation_3433
3300||2407||Conversion||http://edamontology.org/operation_3434
3301||838||widgetTools||http://www.ebi.ac.uk/efo/swo/SWO_0000728
3302||838||xcms||http://www.ebi.ac.uk/efo/swo/SWO_0000729
3303||839||data visualization||http://www.ebi.ac.uk/efo/swo/SWO_0000724
3304||838||vsn||http://www.ebi.ac.uk/efo/swo/SWO_0000725
3305||838||weaver||http://www.ebi.ac.uk/efo/swo/SWO_0000726
3306||838||webbioc||http://www.ebi.ac.uk/efo/swo/SWO_0000727
3307||838||tspair||http://www.ebi.ac.uk/efo/swo/SWO_0000720
3308||838||twilight||http://www.ebi.ac.uk/efo/swo/SWO_0000721
3309||2746||Gene transcription features||http://edamontology.org/topic_2399
3310||4017||Two-stage measurement error model||http://www.ebi.ac.uk/efo/swo/SWO_0000722
3312||1354||Exons||http://edamontology.org/topic_2397
3311||838||vbmp||http://www.ebi.ac.uk/efo/swo/SWO_0000723
3313||838||topGO||http://www.ebi.ac.uk/efo/swo/SWO_0000719
3314||2397||Antimicrobial resistance prediction||http://edamontology.org/operation_3482
3315||838||timecourse||http://www.ebi.ac.uk/efo/swo/SWO_0000717
3316||838||tkWidgets||http://www.ebi.ac.uk/efo/swo/SWO_0000718
3317||4017|| t-test ||http://www.ebi.ac.uk/efo/swo/SWO_0000715
3318||838||tilingArray||http://www.ebi.ac.uk/efo/swo/SWO_0000716
3319||4017||Statistical tests||http://www.ebi.ac.uk/efo/swo/SWO_0000713
3320||838||stepNorm||http://www.ebi.ac.uk/efo/swo/SWO_0000714
3321||838||ssize||http://www.ebi.ac.uk/efo/swo/SWO_0000711
3322||838||stam||http://www.ebi.ac.uk/efo/swo/SWO_0000712
3323||838||sscore||http://www.ebi.ac.uk/efo/swo/SWO_0000710
3325||1825||Pharmacology||http://edamontology.org/topic_0202
3324||3516||Phylogenetic tree reconstruction||http://edamontology.org/operation_3478
3326||3327||Gene regulation||http://edamontology.org/topic_0204
3327||2965||Gene expression||http://edamontology.org/topic_0203
3329||526||Pharmacogenomics||http://edamontology.org/topic_0208
3328||2729||k-mer counting||http://edamontology.org/operation_3472
3330||2890||Nucleic acid alignment folding prediction (alignment-based)||http://edamontology.org/operation_3471
3331||1548||Medicinal chemistry||http://edamontology.org/topic_0209
3332||3286||Probabilistic data generation||http://edamontology.org/operation_3480
3333||2721||Probabilistic sequence generation||http://edamontology.org/operation_3481
3334||3942||Fish||http://edamontology.org/topic_0210
3335||3942||Flies||http://edamontology.org/topic_0211
3336||2397||Virulence prediction||http://edamontology.org/operation_3461
3337||1105||Taxonomic classification||http://edamontology.org/operation_3460
3338||326||Gene expression correlation analysis||http://edamontology.org/operation_3463
3339||838||xps||http://www.ebi.ac.uk/efo/swo/SWO_0000730
3340||2479||RNA structure covariance model generation||http://edamontology.org/operation_3469
3341||838||yaqcaffy||http://www.ebi.ac.uk/efo/swo/SWO_0000731
3342||2618||Protein residue cluster calculation||http://edamontology.org/operation_0393
3343||2677||Hydrogen bond calculation||http://edamontology.org/operation_0394
3344||2677||Protein distance matrix calculation||http://edamontology.org/operation_0391
3345||2618||Protein contact map calculation||http://edamontology.org/operation_0392
3346||3446||Ramachandran plot validation||http://edamontology.org/operation_0397
3347||1229||Protein molecular weight calculation||http://edamontology.org/operation_0398
3348||2677||Residue non-canonical interaction detection||http://edamontology.org/operation_0395
3349||2683||Ramachandran plot calculation||http://edamontology.org/operation_0396
3350||1229||Protein extinction coefficient calculation||http://edamontology.org/operation_0399
3351||2889||RNA secondary structure prediction (shape-based)||http://edamontology.org/operation_3470
3352||3942||Microarrays||http://edamontology.org/topic_0200
3353||2672||Protein peeling||http://edamontology.org/operation_0390
3354||1197||Protein-nucleic acid binding site analysis||http://edamontology.org/operation_0389
3355||2673||Protein binding site prediction (from structure)||http://edamontology.org/operation_0388
3356||3342||Protein hydropathy cluster calculation||http://edamontology.org/operation_0385
3357||2668||Protein solvent accessibility calculation||http://edamontology.org/operation_0384
3358||3357||Protein surface and interior calculation||http://edamontology.org/operation_0387
3359||1229||Protein dipole moment calculation||http://edamontology.org/operation_0386
3360||2723||Repeat sequence organisation analysis||http://edamontology.org/operation_0380
3361||2668||Protein hydropathy calculation (from structure)||http://edamontology.org/operation_0383
3362||2986||Data mining||http://edamontology.org/topic_0218
3363||2990||Data deposition, annotation and curation||http://edamontology.org/topic_0219
3364||3942||Literature analysis||http://edamontology.org/topic_0217
3365||3942||Worms||http://edamontology.org/topic_0215
3366||3942||Mice or rats||http://edamontology.org/topic_0213
3367||3942||Genome annotation||http://edamontology.org/topic_0222
3368||3942||Sequence annotation||http://edamontology.org/topic_0221
3369||2990||File management||http://edamontology.org/topic_0220
3370||1584||Drug report||http://edamontology.org/data_1696
3371||2723||Repeat sequence detection||http://edamontology.org/operation_0379
3372||3942||Sequence composition calculation (protein)||http://edamontology.org/operation_0378
3373||3942||Number of output entities||http://edamontology.org/data_1694
3374||3942||Sequence composition calculation (nucleic acid)||http://edamontology.org/operation_0377
3375||3942||Hit sort order||http://edamontology.org/data_1695
3376||2113||Person name||http://edamontology.org/data_1692
3377||3942||Number of iterations||http://edamontology.org/data_1693
3378||2137||Password||http://edamontology.org/data_1690
3379||2137||Email address||http://edamontology.org/data_1691
3380||2708||DNA transcription||http://edamontology.org/operation_0372
3381||2708||DNA translation||http://edamontology.org/operation_0371
3382||2714||Restriction site creation||http://edamontology.org/operation_0370
3383||838||snpMatrix||http://www.ebi.ac.uk/efo/swo/SWO_0000701
3384||838||snapCGH||http://www.ebi.ac.uk/efo/swo/SWO_0000700
3385||838||spikeLI||http://www.ebi.ac.uk/efo/swo/SWO_0000703
3386||838||splicegear||http://www.ebi.ac.uk/efo/swo/SWO_0000705
3387||838||spkTools||http://www.ebi.ac.uk/efo/swo/SWO_0000704
3388||838||spotSegmentation||http://www.ebi.ac.uk/efo/swo/SWO_0000707
3389||838||splots||http://www.ebi.ac.uk/efo/swo/SWO_0000706
3390||4039||sqlite||http://www.ebi.ac.uk/efo/swo/SWO_0000709
3391||4039||sproc||http://www.ebi.ac.uk/efo/swo/SWO_0000708
3392||2714||Sequence mutation and randomization||http://edamontology.org/operation_0367
3393||1229||Protein sequence cleavage||http://edamontology.org/operation_0366
3394||2714||Sequence cutting||http://edamontology.org/operation_0369
3395||2714||Sequence masking||http://edamontology.org/operation_0368
3396||183||GenBank-HTML||http://edamontology.org/format_2532
3397||3094||Sequence annotation||http://edamontology.org/operation_0361
3398||2649||Structural similarity search||http://edamontology.org/operation_0360
3399||3138||Nucleic acid sequence reverse and complement||http://edamontology.org/operation_0363
3400||3397||Genome annotation||http://edamontology.org/operation_0362
3401||2768||Nucleic acid restriction digest||http://edamontology.org/operation_0365
3402||2721||Random sequence generation||http://edamontology.org/operation_0364
3403||3942||Structure retrieval (by keyword)||http://edamontology.org/operation_0358
3404||3942||Structure retrieval (by code)||http://edamontology.org/operation_0357
3405||3942||Sequence database search (by isoelectric point)||http://edamontology.org/operation_0356
3406||3942||Sequence database search (by molecular weight)||http://edamontology.org/operation_0355
3407||3942||Structure database search (by sequence)||http://edamontology.org/operation_0359
3408||3942||Sequence database search (by sequence using word-based methods)||http://edamontology.org/operation_0350
3409||3942||Sequence database search (by sequence for primer sequences)||http://edamontology.org/operation_0354
3410||3942||Sequence database search (by sequence using global alignment-based methods)||http://edamontology.org/operation_0353
3411||3942||Sequence database search (by sequence using local alignment-based methods)||http://edamontology.org/operation_0352
3412||3942||Sequence database search (by sequence using profile-based methods)||http://edamontology.org/operation_0351
3415||3942||Sequence profile database search||http://edamontology.org/operation_0342
3416||1467||giFASTA format||http://edamontology.org/format_1940
3413||1605||Gel ID||http://edamontology.org/data_2790
3414||3590||Sequence record format (text)||http://edamontology.org/format_2551
3419||3942||Transmembrane protein database search||http://edamontology.org/operation_0343
3418||3413||Reference map name (SWISS-2DPAGE)||http://edamontology.org/data_2791
3417||3590||Sequence record format (XML)||http://edamontology.org/format_2552
3420||2072||Protein ID (PeroxiBase)||http://edamontology.org/data_2792
3421||3942||Protein secondary database search||http://edamontology.org/operation_0340
3424||3942||Motif database search||http://edamontology.org/operation_0341
3422||28||SISYPHUS ID||http://edamontology.org/data_2793
3423||181||OBO-XML||http://edamontology.org/format_2550
3425||3503||Alignment format (XML)||http://edamontology.org/format_2555
3426||2492||Phylogenetic tree format (text)||http://edamontology.org/format_2556
3427||3456||Sequence feature table format (XML)||http://edamontology.org/format_2553
3428||3503||Alignment format (text)||http://edamontology.org/format_2554
3430||3159||MaizeDB ID||http://edamontology.org/data_2798
3429||3348||Residue packing validation||http://edamontology.org/operation_1843
3431||2386||Gene ID (MfunGD)||http://edamontology.org/data_2799
3432||3468||Proline mutation value calculation||http://edamontology.org/operation_1842
3433||3954||Rotamer likelihood prediction||http://edamontology.org/operation_1841
3434||3942||Sequence database search (by amino acid composition)||http://edamontology.org/operation_0348
3435||3478||Sequence database search (by property)||http://edamontology.org/operation_0349
3438||190||ORF ID||http://edamontology.org/data_2794
3437||2452||Sequence similarity search||http://edamontology.org/operation_0346
3436||3942||DSSP secondary structure assignment||http://edamontology.org/operation_1847
3441||3942||Sequence database search (by motif or pattern)||http://edamontology.org/operation_0347
3439||942||HET group detection||http://edamontology.org/operation_1846
3440||1605||ORF identifier||http://edamontology.org/data_2795
3442||3942||PDB file sequence retrieval||http://edamontology.org/operation_1845
3444||3942||Sequence retrieval (by code)||http://edamontology.org/operation_0344
3443||2080||Linucs ID||http://edamontology.org/data_2796
3445||3942||Sequence retrieval (by keyword)||http://edamontology.org/operation_0345
3447||2072||Protein ID (LGICdb)||http://edamontology.org/data_2797
3446||3507||Dihedral angle validation||http://edamontology.org/operation_1844
3448||2994||Structural biology||http://edamontology.org/topic_1317
3449||3486||Structure formatting||http://edamontology.org/operation_1848
3450||3309||Promoters||http://edamontology.org/topic_1312
3451||3414||GFF2-seq||http://edamontology.org/format_1938
3452||3414||GFF3-seq||http://edamontology.org/format_1939
3453||1487||GenBank format||http://edamontology.org/format_1936
3454||177||OBO||http://edamontology.org/format_2549
3455||1487||genpept||http://edamontology.org/format_1937
3456||3502||Sequence feature table format||http://edamontology.org/format_2548
3458||1488||uniprotkb-like format||http://edamontology.org/format_2547
3457||177||fitch program||http://edamontology.org/format_1934
3460||346||GCG||http://edamontology.org/format_1935
3459||3590||FASTA-like||http://edamontology.org/format_2546
3461||1449||FASTQ-sanger||http://edamontology.org/format_1932
3462||1449||FASTQ-solexa||http://edamontology.org/format_1933
3463||1449||FASTQ||http://edamontology.org/format_1930
3464||1449||FASTQ-illumina||http://edamontology.org/format_1931
3465||209||REDIdb ID||http://edamontology.org/data_2781
3467||685||SMART domain name||http://edamontology.org/data_2782
3466||2466||Protein SNP mapping||http://edamontology.org/operation_0330
3468||1443||Protein modelling (mutation)||http://edamontology.org/operation_0331
3469||3221||Stock number (TAIR)||http://edamontology.org/data_2780
3470||3942||Immunogen design||http://edamontology.org/operation_0332
3471||3942||Protein features (domains) format||http://edamontology.org/format_2542
3472||3590||EMBL-like format||http://edamontology.org/format_2543
3473||88||Protein cysteine and disulfide bond assignment||http://edamontology.org/operation_1850
3474||2939||FASTQ-like format||http://edamontology.org/format_2545
3476||839||Visualisation||http://edamontology.org/operation_0337
3477||2072||Protein ID (TopDB)||http://edamontology.org/data_2789
3475||2746||Operon||http://edamontology.org/topic_1311
3478||2397||Sequence database search||http://edamontology.org/operation_0338
3480||2065||NCBI genome accession||http://edamontology.org/data_2787
3479||2452||Structure database search||http://edamontology.org/operation_0339
3481||3942||Sequence profile data_3481||http://edamontology.org/data_2788
3483||4050||Zinc finger prediction||http://edamontology.org/operation_0333
3482||2073||Virus ID||http://edamontology.org/data_2785
3485||1229||Enzyme kinetics calculation||http://edamontology.org/operation_0334
3484||2065||NCBI Genome Project ID||http://edamontology.org/data_2786
3487||2108||Protein family ID (PANTHER)||http://edamontology.org/data_2783
3486||2407||Formatting||http://edamontology.org/operation_0335
3488||2407||Format validation||http://edamontology.org/operation_0336
3489||3482||RNAVirusDB ID||http://edamontology.org/data_2784
3490||1785||Splice sites||http://edamontology.org/topic_1307
3491||3309||Matrix/scaffold attachment sites||http://edamontology.org/topic_1308
3492||783||Restriction sites||http://edamontology.org/topic_1305
3493||1453||EMBL format||http://edamontology.org/format_1927
3495||177||Staden experiment format||http://edamontology.org/format_1928
3494||3309||CpG island and isochores||http://edamontology.org/topic_1304
3496||1467||FASTA format||http://edamontology.org/format_1929
3497||2765||PolyA signal or sites||http://edamontology.org/topic_1302
3498||3414||acedb||http://edamontology.org/format_1923
3499||3942||clustal sequence format||http://edamontology.org/format_1924
3500||177||codata||http://edamontology.org/format_1925
3501||1467||dbid||http://edamontology.org/format_1926
3502||137||Sequence feature annotation format||http://edamontology.org/format_1920
3503||137||Alignment format||http://edamontology.org/format_1921
3506||177||strider format||http://edamontology.org/format_1962
3505||177||SAM||http://edamontology.org/format_2573
3504||2395||Protein structure assignment||http://edamontology.org/operation_0320
3508||177||Stockholm format||http://edamontology.org/format_1961
3507||2395||Protein model validation||http://edamontology.org/operation_0321
3509||177||Staden format||http://edamontology.org/format_1960
3510||137||Raw sequence format||http://edamontology.org/format_2571
3511||176||BAM||http://edamontology.org/format_2572
3512||2500||Phylogenetic tree analysis||http://edamontology.org/operation_0324
3513||72||completely unambiguous pure rna sequence||http://edamontology.org/format_2570
3514||2453||Phylogenetic tree comparison||http://edamontology.org/operation_0325
3515||2459||Molecular model refinement||http://edamontology.org/operation_0322
3516||2500||Phylogenetic tree generation||http://edamontology.org/operation_0323
3517||2422||Protein folding simulation||http://edamontology.org/operation_0328
3518||1443||Protein folding pathway prediction||http://edamontology.org/operation_0329
3519||1222||Phylogenetic tree editing||http://edamontology.org/operation_0326
3520||147||Phylogenetic footprinting / shadowing||http://edamontology.org/operation_0327
3521||1467||Pearson format||http://edamontology.org/format_1954
3522||3942||phylip sequence format||http://edamontology.org/format_1955
3523||177||pdbseqresnuc||http://edamontology.org/format_1952
3524||177||pdbseqres||http://edamontology.org/format_1953
3525||177||refseqp||http://edamontology.org/format_1958
3526||3942||selex sequence format||http://edamontology.org/format_1959
3528||3942||phylipnon sequence format||http://edamontology.org/format_1956
3527||64||completely unambiguous pure dna||http://edamontology.org/format_2569
3529||177||raw||http://edamontology.org/format_1957
3530||37||completely unambiguous pure nucleotide||http://edamontology.org/format_2568
3531||177||completely unambiguous||http://edamontology.org/format_2566
3532||2838||completely unambiguous pure||http://edamontology.org/format_2567
3533||3942||STRING entry format||http://edamontology.org/format_2560
3534||177||PED/MAP||http://edamontology.org/format_3288
3535||2943||Sequence assembly format (text)||http://edamontology.org/format_2561
3537||177||pdbatomnuc||http://edamontology.org/format_1951
3538||137||Individual genetic data format||http://edamontology.org/format_3287
3536||3942||Amino acid identifier format||http://edamontology.org/format_2562
3539||177||pdbatom||http://edamontology.org/format_1950
3540||2592||Sequence assembly||http://edamontology.org/operation_0310
3541||3534||PED||http://edamontology.org/format_3286
3542||2715||Microarray data standardization and normalization||http://edamontology.org/operation_0311
3543||3534||MAP||http://edamontology.org/format_3285
3545||3942||Sequencing-based expression profile data processing||http://edamontology.org/operation_0312
3544||176||SFF||http://edamontology.org/format_3284
3546||3298||Gene expression profile clustering||http://edamontology.org/operation_0313
3547||2715||Gene expression profiling||http://edamontology.org/operation_0314
3548||1467||A2M||http://edamontology.org/format_3281
3549||1106||Gene expression profile comparison||http://edamontology.org/operation_0315
3550||3942||Functional profiling||http://edamontology.org/operation_0316
3551||3942||EST and cDNA sequence analysis||http://edamontology.org/operation_0317
3552||3942||Structural genomics target selection||http://edamontology.org/operation_0318
3553||177||nexus-seq||http://edamontology.org/format_1949
3554||1443||Protein secondary structure assignment||http://edamontology.org/operation_0319
3555||177||hennig86||http://edamontology.org/format_1941
3556||177||ig||http://edamontology.org/format_1942
3557||177||igstrict||http://edamontology.org/format_1943
3558||177||jackknifer||http://edamontology.org/format_1944
3559||177||mase format||http://edamontology.org/format_1945
3560||181||EMBL-like (XML)||http://edamontology.org/format_2558
3561||177||mega-seq||http://edamontology.org/format_1946
3562||2492||Phylogenetic tree format (XML)||http://edamontology.org/format_2557
3563||346||MSF||http://edamontology.org/format_1947
3565||177||nbrf/pir||http://edamontology.org/format_1948
3564||3590||GenBank-like format||http://edamontology.org/format_2559
3566||2592||Virtual PCR||http://edamontology.org/operation_0307
3567||1206||Text mining||http://edamontology.org/operation_0306
3568||2452||Literature search||http://edamontology.org/operation_0305
3569||2451||Metadata retrieval||http://edamontology.org/operation_0304
3570||1108||Protein fold recognition||http://edamontology.org/operation_0303
3571||856||Protein threading||http://edamontology.org/operation_0302
3572||181||spML||http://edamontology.org/format_3250
3573||856||Sequence-to-3D-profile alignment||http://edamontology.org/operation_0301
3575||177||OWL Functional Syntax||http://edamontology.org/format_3252
3574||2949||Sequence-to-profile alignment||http://edamontology.org/operation_0300
3576||177||Manchester OWL Syntax||http://edamontology.org/format_3253
3577||177||KRSS2 Syntax||http://edamontology.org/format_3254
3578||70||Turtle||http://edamontology.org/format_3255
3579||70||N-Triples||http://edamontology.org/format_3256
3580||70||Notation3||http://edamontology.org/format_3257
3581||2427||PCR primer design||http://edamontology.org/operation_0308
3582||2427||Microarray probe design||http://edamontology.org/operation_0309
3583||1447||OWL/XML||http://edamontology.org/format_3262
3584||70||RDF/XML||http://edamontology.org/format_3261
3585||181||SBML||http://edamontology.org/format_2585
3586||177||Cytoband format||http://edamontology.org/format_3235
3587||177||TreeCon format||http://edamontology.org/format_1911
3588||177||newick||http://edamontology.org/format_1910
3589||177||Nexus format||http://edamontology.org/format_1912
3590||137||Sequence record format||http://edamontology.org/format_1919
3591||3942||Atomic data format||http://edamontology.org/format_1918
3592||181||CellML||http://edamontology.org/format_3240
3593||3942||Directory metadata||http://edamontology.org/data_0583
3594||181||mzQuantML||http://edamontology.org/format_3248
3595||181||GelML||http://edamontology.org/format_3249
3596||181||TraML||http://edamontology.org/format_3246
3597||1964||Ontology||http://edamontology.org/data_0582
3598||181||mzIdentML||http://edamontology.org/format_3247
3599||3942||Database||http://edamontology.org/data_0581
3600||181||mzML||http://edamontology.org/format_3244
3601||137||Mass spectrometry data format||http://edamontology.org/format_3245
3602||177||PSI MI TAB (MITAB)||http://edamontology.org/format_3242
3603||3040||PSI-PAR||http://edamontology.org/format_3243
3604||181||CopasiML_3604||http://edamontology.org/format_3239
3605||0||role||http://www.ifomis.org/bfo/1.1/snap#Role
3606||3942||NCBI taxonomy vocabulary||http://edamontology.org/data_1719
3607||3942||MeSH||http://edamontology.org/data_1717
3608||3942||HGNC||http://edamontology.org/data_1718
3609||3942||BioPax term||http://edamontology.org/data_1715
3610||3942||GO||http://edamontology.org/data_1716
3611||398||Fate map||http://edamontology.org/data_1713
3612||418||Abstract||http://edamontology.org/data_2849
3613||966||Microarray spots image||http://edamontology.org/data_1714
3614||3616||Chemical structure image||http://edamontology.org/data_1712
3615||2035||Sequence alignment image||http://edamontology.org/data_1711
3616||2035||Structure image||http://edamontology.org/data_1710
3617||137||Data index format||http://edamontology.org/format_3326
3618||177||CT||http://edamontology.org/format_3309
3619||3942||GO (molecular function)||http://edamontology.org/data_1728
3620||3942||GO (cellular component)||http://edamontology.org/data_1729
3621||3942||ChEBI||http://edamontology.org/data_1724
3622||3942||MGED||http://edamontology.org/data_1725
3623||3942||myGrid||http://edamontology.org/data_1726
3624||1060||Ontology concept||http://edamontology.org/data_2858
3625||3942||GO (biological process)||http://edamontology.org/data_1727
3626||3942||Article metadata||http://edamontology.org/data_2857
3627||3942||UMLS||http://edamontology.org/data_1721
3628||3768||Distance matrix||http://edamontology.org/data_2855
3630||3942||Plant ontology term||http://edamontology.org/data_1720
3629||3628||Structural distance matrix||http://edamontology.org/data_2856
3632||3942||Experimental data||http://edamontology.org/data_2028
3631||3942||EMAP||http://edamontology.org/data_1723
3633||3942||FMA||http://edamontology.org/data_1722
3634||1683||Position-specific scoring matrix||http://edamontology.org/data_2854
3636||2170||Drug structure||http://edamontology.org/data_2851
3635||3638||Hanes Woolf plot||http://edamontology.org/data_2026
3637||2170||Toxin structure||http://edamontology.org/data_2852
3638||2056||Enzyme kinetics data||http://edamontology.org/data_2024
3640||3117||Lipid structure||http://edamontology.org/data_2850
3639||3638||Michaelis Menten plot||http://edamontology.org/data_2025
3642||3942||Vienna RNA structural data||http://edamontology.org/data_2022
3641||181||RNAML||http://edamontology.org/format_3311
3644||3942||Sequence mask parameter||http://edamontology.org/data_2023
3643||177||SS||http://edamontology.org/format_3310
3645||3428||BLC||http://edamontology.org/format_3313
3646||177||GDE||http://edamontology.org/format_3312
3647||839||data processing task||http://kt.ijs.si/panovp/OntoDM#OntoDM-KDD_778151
3648||3775||Molecular property (general)||http://edamontology.org/data_2050
3649||3942||Structural data||http://edamontology.org/data_2053
3650||608||HMMER3||http://edamontology.org/format_3329
3651||3617||BAI||http://edamontology.org/format_3327
3652||608||HMMER2||http://edamontology.org/format_3328
3654||3942||Pairwise structure alignment generation (local)||http://edamontology.org/operation_0507
3653||3942||Experimental data (proteomics)||http://edamontology.org/data_2838
3656||3942||Structure alignment (RNA)||http://edamontology.org/operation_0506
3655||1006||Pathway ID (BioSystems)||http://edamontology.org/data_2837
3657||2948||Local structure alignment||http://edamontology.org/operation_0509
3658||3482||DPVweb ID||http://edamontology.org/data_2836
3660||3942||Pairwise structure alignment generation (global)||http://edamontology.org/operation_0508
3659||2386||Gene ID (VBASE2)||http://edamontology.org/data_2835
3661||3669||Latest release||http://www.ebi.ac.uk/swo/maturity/SWO_9000072
3663||2035||Phylogenetic tree image||http://edamontology.org/data_1707
3662||3690||Maintained||http://www.ebi.ac.uk/swo/maturity/SWO_9000073
3664||2035||RNA secondary structure image||http://edamontology.org/data_1708
3665||472||Protein secondary structure image||http://edamontology.org/data_1709
3666||3669||First release||http://www.ebi.ac.uk/swo/maturity/SWO_9000071
3668||1964||Report||http://edamontology.org/data_2048
3667||3690||Obsolete||http://www.ebi.ac.uk/swo/maturity/SWO_9000066
3669||3690||Live||http://www.ebi.ac.uk/swo/maturity/SWO_9000065
3670||3942||Nucleic acid sequence record (lite)||http://edamontology.org/data_2046
3671||3942||Secondary structure alignment generation||http://edamontology.org/operation_0500
3672||3690||Release candidate||http://www.ebi.ac.uk/swo/maturity/SWO_9000064
3675||2644||Protein secondary structure alignment generation||http://edamontology.org/operation_0501
3674||3690||beta||http://www.ebi.ac.uk/swo/maturity/SWO_9000063
3673||3942||Protein sequence record (lite)||http://edamontology.org/data_2047
3676||2479||RNA secondary structure alignment||http://edamontology.org/operation_0502
3678||2948||Pairwise structure alignment||http://edamontology.org/operation_0503
3677||3690||Superseded||http://www.ebi.ac.uk/swo/maturity/SWO_9000069
3679||3942||Multiple structure alignment construction||http://edamontology.org/operation_0504
3680||3942||Databank||http://edamontology.org/data_2831
3682||3942||Structure alignment (protein)||http://edamontology.org/operation_0505
3681||3942||Web portal||http://edamontology.org/data_2832
3683||3942||Genome version information||http://edamontology.org/data_2041
3684||1964||Sequence||http://edamontology.org/data_2044
3686||181||BLAST XML results format||http://edamontology.org/format_3331
3685||1964||Evidence||http://edamontology.org/data_2042
3687||3942||Sequence record lite||http://edamontology.org/data_2043
3688||3428||PO||http://edamontology.org/format_3330
3689||3690||alpha||http://www.ebi.ac.uk/swo/maturity/SWO_9000062
3690||4024||Development status||http://www.ebi.ac.uk/swo/maturity/SWO_9000061
3691||1964||Database search results||http://edamontology.org/data_2080
3692||3942||Secondary structure||http://edamontology.org/data_2081
3693||2441||markx3||http://edamontology.org/format_1989
3694||2441||markx2||http://edamontology.org/format_1988
3695||2441||markx10||http://edamontology.org/format_1987
3696||2441||markx1||http://edamontology.org/format_1986
3697||2441||markx0||http://edamontology.org/format_1985
3698||3942||nexus alignment format||http://edamontology.org/format_1994
3699||3942||nexusnon alignment format||http://edamontology.org/format_1995
3700||3942||Secondary structure report||http://edamontology.org/data_2881
3701||2442||meganon||http://edamontology.org/format_1992
3702||3942||msf alignment format||http://edamontology.org/format_1993
3703||3942||Secondary structure image||http://edamontology.org/data_2880
3704||177||match||http://edamontology.org/format_1990
3706||1684||Sequence motif (protein)||http://edamontology.org/data_2071
3705||2442||mega||http://edamontology.org/format_1991
3707||2044||Nucleic acid sequence record||http://edamontology.org/data_2887
3708||2043||Protein sequence record||http://edamontology.org/data_2886
3709||3942||Nucleic acid sequence record (full) ||http://edamontology.org/data_2889
3710||3942||Protein sequence record (full)||http://edamontology.org/data_2888
3711||3942||RNA features report||http://edamontology.org/data_2883
3713||3942||Search parameter||http://edamontology.org/data_2079
3712||3942||DNA features||http://edamontology.org/data_2882
3714||3942||Nucleic acid features report (polymorphism)||http://edamontology.org/data_2885
3715||1964||Plot||http://edamontology.org/data_2884
3716||4024||version name||http://purl.obolibrary.org/obo/IAO_0000129
3717||1684||Sequence motif (nucleic acid)||http://edamontology.org/data_2070
3718||2447||PHYLIP format||http://edamontology.org/format_1997
3719||3428||pair||http://edamontology.org/format_1996
3720||177||scores format||http://edamontology.org/format_1999
3721||2447||phylipnon||http://edamontology.org/format_1998
3722||899||Cell type name||http://edamontology.org/data_2892
3723||66||Biological model accession||http://edamontology.org/data_2891
3724||1555||Drug name||http://edamontology.org/data_2899
3725||1562||Monosaccharide accession||http://edamontology.org/data_2898
3726||188||Toxin accession||http://edamontology.org/data_2897
3727||188||Toxin name||http://edamontology.org/data_2896
3728||1555||Drug accession||http://edamontology.org/data_2895
3729||65||Compound accession||http://edamontology.org/data_2894
3730||899||Cell type accession||http://edamontology.org/data_2893
3731||3942||Nucleic acid features report (microsatellite)||http://edamontology.org/data_2868
3732||3942||Nucleic acid features report (RFLP)||http://edamontology.org/data_2869
3733||177||ASN.1 sequence format||http://edamontology.org/format_1966
3734||3942||treecon sequence format||http://edamontology.org/format_1965
3735||177||plain text format (unformatted)||http://edamontology.org/format_1964
3736||1455||UniProtKB format||http://edamontology.org/format_1963
3737||177||debug-seq||http://edamontology.org/format_1969
3738||181||dasdna||http://edamontology.org/format_1968
3739||181||DAS format||http://edamontology.org/format_1967
3740||1964||Data reference||http://edamontology.org/data_2093
3741||1467||NCBI format||http://edamontology.org/format_1972
3742||1605||Job identifier||http://edamontology.org/data_2098
3743||177||nexusnon||http://edamontology.org/format_1973
3744||177||jackknifernon||http://edamontology.org/format_1970
3746||3942||meganon sequence format||http://edamontology.org/format_1971
3745||2833||Name||http://edamontology.org/data_2099
3747||4039||sequence feature format||http://urigen_local_uri/963a1b3b-49f2-4ef9-8f37-5e9cd5403b2a/http://www.ebi.ac.uk/swo/data/SWO_3000069
3748||2439||Codon usage bias||http://edamontology.org/data_2865
3749||3942||Nucleic acid features report (VNTR)||http://edamontology.org/data_2867
3750||3942||Northern blot report||http://edamontology.org/data_2866
3751||3762||Lipid report||http://edamontology.org/data_2879
3752||222||GFF3||http://edamontology.org/format_1975
3753||222||GFF2||http://edamontology.org/format_1974
3754||3942||swiss feature||http://edamontology.org/format_1977
3755||3942||pir||http://edamontology.org/format_1976
3757||177||debug-feat||http://edamontology.org/format_1979
3756||2833||Accession||http://edamontology.org/data_2091
3759||3942||SNP||http://edamontology.org/data_2092
3758||181||DASGFF||http://edamontology.org/format_1978
3760||3942||Database entry version information||http://edamontology.org/data_2090
3761||177||SMILES||http://edamontology.org/format_1196
3762||3668||Structure report||http://edamontology.org/data_2085
3764||177||InChI||http://edamontology.org/format_1197
3763||3668||Nucleic acid report||http://edamontology.org/data_2084
3766||177||mf||http://edamontology.org/format_1198
3765||3942||Alignment data_3765||http://edamontology.org/data_2083
3767||3942||EMBL feature||http://edamontology.org/format_1980
3769||177||inchikey||http://edamontology.org/format_1199
3768||1964||Matrix||http://edamontology.org/data_2082
3770||3942||GenBank feature||http://edamontology.org/format_1981
3771||1093||Radiation hybrid map||http://edamontology.org/data_2870
3773||177||ClustalW format||http://edamontology.org/format_1982
3772||3777||DNA base structural data||http://edamontology.org/data_2088
3774||177||debug||http://edamontology.org/format_1983
3775||1964||Molecular property||http://edamontology.org/data_2087
3776||1467||FASTA-aln||http://edamontology.org/format_1984
3777||2431||Nucleic acid structure data||http://edamontology.org/data_2086
3778||3942||Sequence set (polymorphic)||http://edamontology.org/data_2874
3779||2154||Phylogenetic gene frequencies data||http://edamontology.org/data_2873
3780||3740||ID list||http://edamontology.org/data_2872
3781||2176||Protein structural motif||http://edamontology.org/data_2878
3782||2176||Protein complex||http://edamontology.org/data_2877
3783||3942||DRCAT resource||http://edamontology.org/data_2875
3784||3942||Gene ID (GeneDB Leishmania major)||http://edamontology.org/data_1798
3785||3942||Gene ID (GeneDB Glossina morsitans)||http://edamontology.org/data_1797
3786||3942||Gene ID (GeneDB Plasmodium falciparum)||http://edamontology.org/data_1799
3787||2386||Gene ID (PlasmoDB)||http://edamontology.org/data_1794
3788||3942||Gene name (Bacillus subtilis)||http://edamontology.org/data_1793
3789||2386||Gene ID (FlyBase)||http://edamontology.org/data_1796
3790||2386||Gene ID (EcoGene)||http://edamontology.org/data_1795
3791||3942||Gene name (CGSC)||http://edamontology.org/data_1790
3792||3942||Gene name (MGD)||http://edamontology.org/data_1792
3793||3942||Gene name (HGNC)||http://edamontology.org/data_1791
3795||838||sizepower||http://www.ebi.ac.uk/efo/swo/SWO_0000698
3794||1750||Variant pattern analysis||http://edamontology.org/operation_3504
3796||838||xmapbridge||http://www.ebi.ac.uk/efo/swo/SWO_0000699
3797||3274||Incident curve plotting||http://edamontology.org/operation_3503
3798||3799||Chemical class enrichment||http://edamontology.org/operation_3502
3799||1206||Enrichment||http://edamontology.org/operation_3501
3800||838||siggenes||http://www.ebi.ac.uk/efo/swo/SWO_0000694
3801||4017||Sim method||http://www.ebi.ac.uk/efo/swo/SWO_0000695
3802||838||simpleaffy||http://www.ebi.ac.uk/efo/swo/SWO_0000696
3803||838||simulatorAPMS||http://www.ebi.ac.uk/efo/swo/SWO_0000697
3804||1964||Score||http://edamontology.org/data_1772
3805||392||Sequence version||http://edamontology.org/data_1771
3806||3942||Protein report (function)||http://edamontology.org/data_1776
3807||4017||Rank-invariant set normalization||http://www.ebi.ac.uk/efo/swo/SWO_0000680
3808||1686||.raw files||http://www.ebi.ac.uk/efo/swo/SWO_0000682
3809||4017||Rank product non-parametric method||http://www.ebi.ac.uk/efo/swo/SWO_0000681
3810||838||qpgraph||http://www.ebi.ac.uk/efo/swo/SWO_0000672
3811||4017||Quantile normalization||http://www.ebi.ac.uk/efo/swo/SWO_0000673
3812||4017||Quantile regression techniques||http://www.ebi.ac.uk/efo/swo/SWO_0000674
3813||838||quantsmooth||http://www.ebi.ac.uk/efo/swo/SWO_0000675
3814||838||qvalue||http://www.ebi.ac.uk/efo/swo/SWO_0000676
3815||838||rHVDM||http://www.ebi.ac.uk/efo/swo/SWO_0000677
3816||838||rMAT||http://www.ebi.ac.uk/efo/swo/SWO_0000678
3817||838||rama||http://www.ebi.ac.uk/efo/swo/SWO_0000679
3818||3942||Gene name (dictyBase)||http://edamontology.org/data_1785
3819||3942||Gene name (CGD)||http://edamontology.org/data_1784
3820||3942||Gene name (ASPGD)||http://edamontology.org/data_1783
3821||3942||Gene name (TGD)||http://edamontology.org/data_1789
3822||3942||Gene name (SGD)||http://edamontology.org/data_1788
3823||3942||Gene name (MaizeGDB)||http://edamontology.org/data_1787
3824||3942||Gene name (EcoGene primary)||http://edamontology.org/data_1786
3825||838||sigPathway||http://www.ebi.ac.uk/efo/swo/SWO_0000693
3826||838||seqLogo||http://www.ebi.ac.uk/efo/swo/SWO_0000692
3827||838||sagenhaft||http://www.ebi.ac.uk/efo/swo/SWO_0000691
3828||838||safe||http://www.ebi.ac.uk/efo/swo/SWO_0000690
3829||838||reb||http://www.ebi.ac.uk/efo/swo/SWO_0000685
3830||838||rflowcyt||http://www.ebi.ac.uk/efo/swo/SWO_0000686
3831||838||rbsurv||http://www.ebi.ac.uk/efo/swo/SWO_0000683
3832||177||rda||http://www.ebi.ac.uk/efo/swo/SWO_0000684
3833||838||rtracklayer||http://www.ebi.ac.uk/efo/swo/SWO_0000689
3834||4039||.rma format||http://www.ebi.ac.uk/efo/swo/SWO_0000687
3835||838||rsbml||http://www.ebi.ac.uk/efo/swo/SWO_0000688
3836||838||plier||http://www.ebi.ac.uk/efo/swo/SWO_0000660
3837||709||Orpha number||http://edamontology.org/data_2800
3838||2176||Protein atom||http://edamontology.org/data_1755
3839||2176||Protein residue||http://edamontology.org/data_1756
3840||3942||Nucleic acid structure comparison||http://edamontology.org/topic_2280
3843||838||plgem||http://www.ebi.ac.uk/efo/swo/SWO_0000659
3842||163||PDB residue name||http://edamontology.org/data_1758
3841||2072||Protein ID (ConoServer)||http://edamontology.org/data_2804
3845||1522||Atom name||http://edamontology.org/data_1757
3844||838||pkgDepTools||http://www.ebi.ac.uk/efo/swo/SWO_0000658
3846||2384||GeneSNP ID||http://edamontology.org/data_2805
3847||2072||Protein ID (EcID)||http://edamontology.org/data_2802
3849||949||PDB model number||http://edamontology.org/data_1759
3848||56||Clone ID (RefSeq)||http://edamontology.org/data_2803
3850||4039||pedigree data file||http://www.ebi.ac.uk/efo/swo/SWO_0000655
3851||838||pdmclass||http://www.ebi.ac.uk/efo/swo/SWO_0000654
3852||838||pickgene||http://www.ebi.ac.uk/efo/swo/SWO_0000657
3853||2458||Mathematical modelling||http://edamontology.org/operation_3545
3854||838||pgUtils||http://www.ebi.ac.uk/efo/swo/SWO_0000656
3855||838||pcot2||http://www.ebi.ac.uk/efo/swo/SWO_0000651
3856||838||pcaMethods||http://www.ebi.ac.uk/efo/swo/SWO_0000650
3857||838||pdInfoBuilder||http://www.ebi.ac.uk/efo/swo/SWO_0000653
3858||3942||obsolete_pdf||http://www.ebi.ac.uk/efo/swo/SWO_0000652
3859||1964||qPCR data||http://www.ebi.ac.uk/efo/swo/SWO_0000670
3860||838||qpcrNorm||http://www.ebi.ac.uk/efo/swo/SWO_0000671
3861||3942||CATH domain sequences (ATOM)||http://edamontology.org/data_1766
3862||3942||CATH domain sequences (COMBS)||http://edamontology.org/data_1767
3863||3942||CATH representative domain sequences (ATOM)||http://edamontology.org/data_1764
3864||1521||Lipid identifier||http://edamontology.org/data_2812
3865||3942||CATH representative domain sequences (COMBS)||http://edamontology.org/data_1765
3866||3942||CATH domain report||http://edamontology.org/data_1762
3867||838||puma||http://www.ebi.ac.uk/efo/swo/SWO_0000669
3868||3942||obsolete_ps||http://www.ebi.ac.uk/efo/swo/SWO_0000668
3869||838||preprocessCore||http://www.ebi.ac.uk/efo/swo/SWO_0000667
3870||838||prada||http://www.ebi.ac.uk/efo/swo/SWO_0000666
3871||838||ppiStats||http://www.ebi.ac.uk/efo/swo/SWO_0000665
3872||4017||Position weight matrix (PWM )||http://www.ebi.ac.uk/efo/swo/SWO_0000664
3873||3942||obsolete_png||http://www.ebi.ac.uk/efo/swo/SWO_0000663
3874||838||plw||http://www.ebi.ac.uk/efo/swo/SWO_0000662
3875||1964||Graph plot||http://www.ebi.ac.uk/efo/swo/SWO_0000661
3876||298||Sequence coordinates||http://edamontology.org/data_2012
3877||3775||Amino acid property||http://edamontology.org/data_2016
3878||3942||Ontology relation type||http://edamontology.org/data_1730
3879||1582||Ontology concept definition||http://edamontology.org/data_1731
3881||1964||Map data||http://edamontology.org/data_2019
3880||3942||Ontology concept comment||http://edamontology.org/data_1732
3883||3942||Annotation||http://edamontology.org/data_2018
3882||3942||Ontology concept reference||http://edamontology.org/data_1733
3884||838||occugene||http://www.ebi.ac.uk/efo/swo/SWO_0000637
3885||838||nudge||http://www.ebi.ac.uk/efo/swo/SWO_0000636
3886||838||oligoClasses||http://www.ebi.ac.uk/efo/swo/SWO_0000639
3887||3942||doc2loc document information||http://edamontology.org/data_1738
3888||838||oligo||http://www.ebi.ac.uk/efo/swo/SWO_0000638
3889||4017||Negative binomial distribution||http://www.ebi.ac.uk/efo/swo/SWO_0000631
3890||838||multtest||http://www.ebi.ac.uk/efo/swo/SWO_0000630
3891||4017||Neural networks models||http://www.ebi.ac.uk/efo/swo/SWO_0000633
3892||838||nem||http://www.ebi.ac.uk/efo/swo/SWO_0000632
3893||838||nnNorm||http://www.ebi.ac.uk/efo/swo/SWO_0000635
3894||3942||obsolete_newick||http://www.ebi.ac.uk/efo/swo/SWO_0000634
3895||1581||UniProt keyword||http://edamontology.org/data_2007
3896||3900||Atomic x coordinate||http://edamontology.org/data_1744
3897||3900||Atomic y coordinate||http://edamontology.org/data_1745
3899||3942||Ordered locus name||http://edamontology.org/data_2009
3898||298||PDB residue number||http://edamontology.org/data_1742
3900||626||Atomic coordinate||http://edamontology.org/data_1743
3902||838||pathRender||http://www.ebi.ac.uk/efo/swo/SWO_0000649
3901||3845||PDB atom name||http://edamontology.org/data_1748
3903||839||parse||http://www.ebi.ac.uk/efo/swo/SWO_0000648
3904||838||parody||http://www.ebi.ac.uk/efo/swo/SWO_0000647
3905||3900||Atomic z coordinate||http://edamontology.org/data_1746
3906||838||ontoTools||http://www.ebi.ac.uk/efo/swo/SWO_0000642
3907||838||oneChannelGUI||http://www.ebi.ac.uk/efo/swo/SWO_0000641
3908||1964||OMICS data||http://www.ebi.ac.uk/efo/swo/SWO_0000640
3909||838||panp||http://www.ebi.ac.uk/efo/swo/SWO_0000646
3910||838||pamr||http://www.ebi.ac.uk/efo/swo/SWO_0000645
3911||4039||pair file||http://www.ebi.ac.uk/efo/swo/SWO_0000644
3912||1216||Distribution with notices||http://www.ebi.ac.uk/swo/license/SWO_9000059
3914||38||completely unambiguous pure protein||http://edamontology.org/format_2607
3913||1964||Meta data||http://www.ebi.ac.uk/efo/swo/SWO_0000620
3915||3942||Phylogeny visualisation||http://edamontology.org/topic_2257
3916||838||metahdep||http://www.ebi.ac.uk/efo/swo/SWO_0000621
3917||838||miRNApath||http://www.ebi.ac.uk/efo/swo/SWO_0000622
3918||838||microRNA||http://www.ebi.ac.uk/efo/swo/SWO_0000623
3919||3942||obsolete_Microarray data||http://www.ebi.ac.uk/efo/swo/SWO_0000624
3920||838||minet||http://www.ebi.ac.uk/efo/swo/SWO_0000625
3921||4017||mrnet algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000626
3922||4017||Multinomial probit regression with Gaussian Process priors||http://www.ebi.ac.uk/efo/swo/SWO_0000627
3923||4017||Multiple testing||http://www.ebi.ac.uk/efo/swo/SWO_0000628
3924||4017||Multivariate t mixture models||http://www.ebi.ac.uk/efo/swo/SWO_0000629
3925||838||makecdfenv||http://www.ebi.ac.uk/efo/swo/SWO_0000612
3926||838||marray||http://www.ebi.ac.uk/efo/swo/SWO_0000613
3927||838||maigesPack||http://www.ebi.ac.uk/efo/swo/SWO_0000610
3928||838||makePlatformDesign||http://www.ebi.ac.uk/efo/swo/SWO_0000611
3929||838||matchprobes||http://www.ebi.ac.uk/efo/swo/SWO_0000616
3930||838||mdqc||http://www.ebi.ac.uk/efo/swo/SWO_0000617
3931||4017|| MAS5 ||http://www.ebi.ac.uk/efo/swo/SWO_0000614
3932||177||mas5 format||http://www.ebi.ac.uk/efo/swo/SWO_0000615
3933||4017||M-estimation regression||http://www.ebi.ac.uk/efo/swo/SWO_0000618
3934||838||metaArray||http://www.ebi.ac.uk/efo/swo/SWO_0000619
3935||4039||logicFS dataset||http://www.ebi.ac.uk/efo/swo/SWO_0000600
3936||3942||Transmembrane protein prediction||http://edamontology.org/topic_2278
3937||838||logitT||http://www.ebi.ac.uk/efo/swo/SWO_0000601
3938||611||SNP||http://edamontology.org/topic_2277
3940||4017||Logit-t algorithm||http://www.ebi.ac.uk/efo/swo/SWO_0000602
3939||3942||Protein function prediction||http://edamontology.org/topic_2276
3941||2334||Molecular modelling||http://edamontology.org/topic_2275
3942||1757||obsolete SWO class||http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
3944||838||maanova||http://www.ebi.ac.uk/efo/swo/SWO_0000607
3943||3942||Structure database search||http://edamontology.org/topic_2271
3945||838||macat||http://www.ebi.ac.uk/efo/swo/SWO_0000608
3946||838||made4||http://www.ebi.ac.uk/efo/swo/SWO_0000609
3947||838||lumi||http://www.ebi.ac.uk/efo/swo/SWO_0000603
3948||838||maCorrPlot||http://www.ebi.ac.uk/efo/swo/SWO_0000604
3949||838||maDB||http://www.ebi.ac.uk/efo/swo/SWO_0000605
3950||838||maSigPro||http://www.ebi.ac.uk/efo/swo/SWO_0000606
3951||1780||Statistics||http://edamontology.org/topic_2269
3952||1778||Cheminformatics||http://edamontology.org/topic_2258
3953||2994||Systems biology||http://edamontology.org/topic_2259
3954||3972||Protein modelling (side chains)||http://edamontology.org/operation_0480
3955||3971||Protein-ligand docking||http://edamontology.org/operation_0482
3956||3972||Protein modelling (loops)||http://edamontology.org/operation_0481
3957||2064||SNP detection||http://edamontology.org/operation_0484
3958||1224||Structured RNA prediction and optimisation||http://edamontology.org/operation_0483
3959||3942||Functional mapping||http://edamontology.org/operation_0486
3960||1205||Radiation Hybrid Mapping||http://edamontology.org/operation_0485
3961||2860||Linkage disequilibrium calculation||http://edamontology.org/operation_0488
3962||2858||Haplotype mapping||http://edamontology.org/operation_0487
3963||1442||Genetic code prediction||http://edamontology.org/operation_0489
3964||2783||Protein secondary structure prediction (disulfide bonds)||http://edamontology.org/operation_0471
3965||2783||Protein secondary structure prediction (coils)||http://edamontology.org/operation_0470
3966||1442||Nucleic acid structure prediction||http://edamontology.org/operation_0475
3967||1443||Protein structure prediction||http://edamontology.org/operation_0474
3968||2897||GPCR analysis||http://edamontology.org/operation_0473
3969||2787||GPCR prediction||http://edamontology.org/operation_0472
3970||3972||Protein modelling (backbone)||http://edamontology.org/operation_0479
3971||2576||Molecular docking||http://edamontology.org/operation_0478
3972||2395||Protein modelling||http://edamontology.org/operation_0477
3973||3967||Ab initio structure prediction||http://edamontology.org/operation_0476
3974||3942||Lipoproteins||http://edamontology.org/topic_2232
3975||840||MIT License||http://www.ebi.ac.uk/swo/license/SWO_9000074
3976||3942||Classification||http://edamontology.org/topic_2230
3977||2994||Cell biology||http://edamontology.org/topic_2229
3978||3942||Structure determination||http://edamontology.org/topic_2226
3979||3942||Protein databases||http://edamontology.org/topic_2225
3980||840||lGPL||http://www.ebi.ac.uk/swo/license/SWO_9000080
3981||2529||Artistic License v1.0||http://www.ebi.ac.uk/swo/license/SWO_9000082
3982||840||EPL v1||http://www.ebi.ac.uk/swo/license/SWO_9000084
3983||840||Modified BSD||http://www.ebi.ac.uk/swo/license/SWO_9000085
3984||840||LPPL||http://www.ebi.ac.uk/swo/license/SWO_9000086
3985||840||OPL v1.0||http://www.ebi.ac.uk/swo/license/SWO_9000087
3986||840||MPL||http://www.ebi.ac.uk/swo/license/SWO_9000088
3987||2949||Constrained sequence alignment||http://edamontology.org/operation_0497
3988||2949||Global sequence alignment||http://edamontology.org/operation_0496
3989||2949||Local sequence alignment||http://edamontology.org/operation_0495
3990||3942||Pairwise sequence alignment generation (global)||http://edamontology.org/operation_0494
3991||3942||Pairwise sequence alignment generation (local)||http://edamontology.org/operation_0493
3992||2949||Multiple sequence alignment||http://edamontology.org/operation_0492
3993||3992||Pairwise sequence alignment||http://edamontology.org/operation_0491
3994||186||Dotplot plotting||http://edamontology.org/operation_0490
3995||2949||Tree-based sequence alignment||http://edamontology.org/operation_0499
3996||2949||Consensus-based sequence alignment||http://edamontology.org/operation_0498
3997||4006||Transcription factor binding site prediction||http://edamontology.org/operation_0445
3998||4006||Exonic splicing enhancer prediction||http://edamontology.org/operation_0446
3999||4015||Transcription regulatory element prediction (trans)||http://edamontology.org/operation_0443
4000||4015||Matrix/scaffold attachment site prediction||http://edamontology.org/operation_0444
4001||326||Sequence alignment analysis (site correlation)||http://edamontology.org/operation_0449
4002||2461||Sequence alignment validation||http://edamontology.org/operation_0447
4003||2832||Sequence alignment analysis (conservation)||http://edamontology.org/operation_0448
4004||4015||Transcription regulatory element prediction (DNA-cis)||http://edamontology.org/operation_0441
4005||4015||Transcription regulatory element prediction (RNA-cis)||http://edamontology.org/operation_0442
4006||4015||Promoter prediction||http://edamontology.org/operation_0440
4007||0||material entity||http://purl.obolibrary.org/obo/BFO_0000040
4008||3045||Protein membrane regions||http://edamontology.org/topic_1456
4009||3296||Nucleosome formation or exclusion sequence prediction||http://edamontology.org/operation_0432
4010||3296||Splice site prediction||http://edamontology.org/operation_0433
4011||4054||Integrated gene prediction||http://edamontology.org/operation_0434
4012||4054||Operon prediction||http://edamontology.org/operation_0435
4013||4053||Coding region prediction||http://edamontology.org/operation_0436
4014||4053||Selenocysteine insertion sequence (SECIS) prediction||http://edamontology.org/operation_0437
4015||4053||Regulatory element prediction||http://edamontology.org/operation_0438
4016||4013||Translation initiation site prediction||http://edamontology.org/operation_0439
4017||4024||algorithm||http://purl.obolibrary.org/obo/IAO_0000064
4018||3296||CpG island and isochore detection||http://edamontology.org/operation_0430
4019||3296||Restriction site recognition||http://edamontology.org/operation_0431
4020||2783||Protein secondary structure prediction (turns)||http://edamontology.org/operation_0469
4021||2783||Protein secondary structure prediction (integrated)||http://edamontology.org/operation_0467
4022||2783||Protein secondary structure prediction (helices)||http://edamontology.org/operation_0468
4023||3999||siRNA binding specificity prediction||http://edamontology.org/operation_0465
4025||3999||microRNA detection||http://edamontology.org/operation_0463
4024||0||information content entity||http://purl.obolibrary.org/obo/IAO_0000030
4026||4054||tRNA gene prediction||http://edamontology.org/operation_0464
4027||2768||Nucleic acid curvature calculation||http://edamontology.org/operation_0461
4028||4032||Nucleic acid temperature profile plotting||http://edamontology.org/operation_0460
4029||4032||Nucleic acid melting curve plotting||http://edamontology.org/operation_0458
4030||4032||Nucleic acid probability profile plotting||http://edamontology.org/operation_0459
4031||2768||Nucleic acid thermodynamic property calculation||http://edamontology.org/operation_0455
4032||2768||Nucleic acid melting profile plotting||http://edamontology.org/operation_0456
4033||4032||Nucleic acid stitch profile plotting||http://edamontology.org/operation_0457
4034||3187||Chimeric sequence detection||http://edamontology.org/operation_0450
4035||3187||Recombination detection||http://edamontology.org/operation_0451
4036||3187||Indel detection||http://edamontology.org/operation_0452
4037||3942||Nucleosome formation potential prediction||http://edamontology.org/operation_0453
4038||0||process||http://purl.obolibrary.org/obo/BFO_0000007
4039||4024||data format specification||http://purl.obolibrary.org/obo/IAO_0000098
4040||3274||Protein titration curve plotting||http://edamontology.org/operation_0402
4041||2597||Protein hydropathy calculation (from sequence)||http://edamontology.org/operation_0401
4042||1229||Protein pH-dependent property calculation||http://edamontology.org/operation_0400
4043||4041||Protein aliphatic index calculation||http://edamontology.org/operation_0406
4044||4041||Protein hydrophobic region calculation||http://edamontology.org/operation_0405
4045||4042||Protein hydrogen exchange rate calculation||http://edamontology.org/operation_0404
4046||4042||Protein isoelectric point calculation||http://edamontology.org/operation_0403
4047||4041||Protein solubility prediction||http://edamontology.org/operation_0409
4048||3274||Protein hydrophobic moment plotting||http://edamontology.org/operation_0407
4049||4041||Protein globularity prediction||http://edamontology.org/operation_0408
4050||4069||Protein-nucleic acid binding prediction||http://edamontology.org/operation_0420
4051||3296||PolyA signal detection||http://edamontology.org/operation_0428
4052||3296||Transposon prediction||http://edamontology.org/operation_0427
4053||2547||Gene component prediction||http://edamontology.org/operation_0426
4054||2547||Whole gene prediction||http://edamontology.org/operation_0425
4055||3942||Epitope mapping (MHC Class II)||http://edamontology.org/operation_0424
4056||3942||Epitope mapping (MHC Class I)||http://edamontology.org/operation_0423
4057||1234||Protein cleavage site prediction||http://edamontology.org/operation_0422
4058||1234||Protein folding site prediction||http://edamontology.org/operation_0421
4059||3296||Quadruplex formation site detection||http://edamontology.org/operation_0429
4060||1442||Nucleic acid feature detection||http://edamontology.org/operation_0415
4061||3942||Protein feature prediction (from sequence)||http://edamontology.org/operation_0414
4062||1234||Protein post-translation modification site prediction||http://edamontology.org/operation_0417
4063||1234||Epitope mapping||http://edamontology.org/operation_0416
4064||4068||Protein signal peptide detection (eukaryotes)||http://edamontology.org/operation_0411
4065||4041||Protein crystallizability prediction||http://edamontology.org/operation_0410
4066||2823||MHC peptide immunogenicity prediction||http://edamontology.org/operation_0413
4067||4068||Protein signal peptide detection (bacteria)||http://edamontology.org/operation_0412
4068||1234||Protein signal peptide detection||http://edamontology.org/operation_0418
4069||1234||Protein binding site prediction (from sequence)||http://edamontology.org/operation_0419
