Description
XMS is an XML-based format for specifying motifs and collections of motifs
used by
NestedMICA.
Example:
<motifset>
<motif>
<name>M00799</name>
<weightmatrix alphabet="DNA" columns="7">
<column pos="0">
<weight symbol="adenine">0.0</weight>
<weight symbol="cytosine">1.0</weight>
<weight symbol="guanine">0.0</weight>
<weight symbol="thymine">0.0</weight>
</column>
<column pos="1">
<weight symbol="adenine">0.9523809523809523</weight>
<weight symbol="cytosine">0.0</weight>
<weight symbol="guanine">0.0</weight>
<weight symbol="thymine">0.047619047619047616</weight>
</column>
<column pos="2">
<weight symbol="adenine">0.0</weight>
<weight symbol="cytosine">1.0</weight>
<weight symbol="guanine">0.0</weight>
<weight symbol="thymine">0.0</weight>
</column>
<column pos="3">
<weight symbol="adenine">0.0</weight>
<weight symbol="cytosine">0.09523809523809523</weight>
<weight symbol="guanine">0.8571428571428571</weight>
<weight symbol="thymine">0.047619047619047616</weight>
</column>
<column pos="4">
<weight symbol="adenine">0.0</weight>
<weight symbol="cytosine">0.0</weight>
<weight symbol="guanine">0.047619047619047616</weight>
<weight symbol="thymine">0.9523809523809523</weight>
</column>
<column pos="5">
<weight symbol="adenine">0.047619047619047616</weight>
<weight symbol="cytosine">0.0</weight>
<weight symbol="guanine">0.9047619047619048</weight>
<weight symbol="thymine">0.047619047619047616</weight>
</column>
<column pos="6">
<weight symbol="adenine">0.0</weight>
<weight symbol="cytosine">0.38095238095238093</weight>
<weight symbol="guanine">0.38095238095238093</weight>
<weight symbol="thymine">0.23809523809523808</weight>
</column>
</weightmatrix>
</motif>
</motifset>