DataFormat

2bit

Applies to:  DNA Sequence Dataset

Description

The 2bit format is a binary format for efficiently storing (multiple) DNA sequences in a compact randomly-accessible format (up to 4Gb). MotifLab is currently able to import DNA track data from 2bit files, but is not able to output tracks in 2bit format. More information about the 2bit format and how to create 2bit files can be found here and here. 2bit formatted files are often used to store entire genomes, and in this case it is possible to extract DNA sequences for any segment as long as the location is known. (In contrast with e.g. FASTA-formatted files where you can only import DNA sequences if they have the same name and length as your current sequence objects)

Arguments

NameDescription
Keep masks If selected, lowercase letters in the DNA sequence will be kept as is ("masked"). If not selected, all bases will be in uppercase.
NOTE: The current implementation of the 2bit format in MotifLab is very inefficient when this option is selected, so it is not recommended to use it.

See Also: output, FASTA, DNA Sequence Dataset